SMTL ID : 8b2j.1 (1 other biounit)

Crystal structure of human STING in complex with ADU-S100

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x GJF: (1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol(Non-covalent)

GJF.1: 13 residues within 4Å: Chain A: S.25, Y.26, G.29, Y.30, R.95, I.98, R.101, V.102, Y.103, T.126, P.127, T.130 Ligands: NA.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.95, A:R.101, A:R.101, A:V.102, A:T.126 Water bridges: A:Y.103, A:S.104, A:S.104 pi-Stacking: A:Y.30 pi-Cation interactions: A:R.101

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: N.50, N.51, R.54 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.51, A:R.54

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: R.95, I.98, R.101 Ligands: GJF.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.95, A:R.101 NA.4: 5 residues within 4Å: Chain A: I.34, E.37, L.38, R.41, Q.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:Q.91 NA.5: 4 residues within 4Å: Chain A: S.58, R.60, C.120, V.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.60, A:V.121, A:V.121 NA.6: 4 residues within 4Å: Chain A: K.87, S.104, N.105, S.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nawrotek, A. et al., Crystal structure of human STING in complex with ADU-S100. To Be Published

Release Date

2022-11-30

Peptides

Stimulator of interferon genes protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stimulator of interferon genes protein

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