SMTL ID : 8b3e.1

Variant Surface Glycoprotein VSG397

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 11 residues within 4Å: Chain A: N.126, K.127, N.130, K.134, A.294, N.295, S.296, Y.299, E.300 Chain B: T.129, R.136 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.300 Hydrogen bonds: A:A.294 NAG-NAG.2: 11 residues within 4Å: Chain A: T.129, R.136 Chain B: N.126, K.127, N.130, K.134, A.294, N.295, S.296, Y.299, E.300 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.300 Hydrogen bonds: B:A.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandra, M. et al., Structural similarities between the metacyclic and bloodstream form variant surface glycoproteins of the African trypanosome. Plos Negl Trop Dis (2023)

Release Date

2023-01-25

Peptides

Variant surface glycoprotein 397: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Variant surface glycoprotein 397