SMTL ID : 8b3s.1

Structure of YjbA in complex with ClpC N-terminal Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.40, N.41, S.169, L.170, R.183, Q.187 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.40, A:N.41, A:L.170, A:R.183 Water bridges: A:Y.40, A:N.41 GOL.2: 7 residues within 4Å: Chain A: Y.165, H.166, I.167, L.170, A.171, H.174, Y.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.171, A:H.174, A:Y.233 Water bridges: A:Y.233, A:Y.233 GOL.3: 5 residues within 4Å: Chain A: N.31, W.32, F.33, D.52, T.53 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.31, A:D.52, A:T.53, A:T.53 Water bridges: A:W.32, A:W.32, A:T.53 GOL.4: 5 residues within 4Å: Chain A: E.37, D.76, L.77, S.78, E.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.76, A:L.77, A:E.164 Water bridges: A:E.37 GOL.5: 9 residues within 4Å: Chain B: T.6, M.8, R.11, M.98, R.102, H.106, S.107, Y.108, V.109 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.8, B:M.8, B:R.11, B:M.98, B:H.106 GOL.6: 4 residues within 4Å: Chain B: E.71, S.72, L.73, I.74 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 4 residues within 4Å: Chain B: T.13, R.15, G.110, T.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evans, N.J. et al., Structure of YjbA in complex with ClpC N-terminal Domain. To Be Published

Release Date

2023-12-27

Peptides

UPF0736 protein B4122_0676,UPF0736 protein YjbA: A
ATP-dependent Clp protease ATP-binding subunit ClpC / Negative regulator of tic competence clcC/mecB: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
Z

UPF0736 protein B4122_0676,UPF0736 protein YjbA

ATP-dependent Clp protease ATP-binding subunit ClpC / Negative regulator of tic competence clcC/mecB