SMTL ID : 8b4m.3 (2 other biounits)

Crystal structure of a hydropyrene synthase (M75L variant) in its closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.83 Ligands: 212.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.83, A:D.83 MG.2: 6 residues within 4Å: Chain A: R.180, N.226, D.227, S.230, E.234 Ligands: 212.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.230, A:E.234 MG.3: 3 residues within 4Å: Chain A: D.83, D.88 Ligands: 212.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.88 MG.5: 6 residues within 4Å: Chain B: R.180, N.226, D.227, S.230, E.234 Ligands: 212.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.230, B:E.234 MG.6: 4 residues within 4Å: Chain B: D.83, E.161 Ligands: MG.7, 212.8 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.83 MG.7: 4 residues within 4Å: Chain B: D.83, D.88 Ligands: MG.6, 212.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.88, B:D.88

2 x 212: ALENDRONATE(Non-covalent)

212.4: 9 residues within 4Å: Chain A: D.83, D.88, R.180, N.226, S.230, E.234 Ligands: MG.1, MG.2, MG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.180, A:N.226 212.8: 11 residues within 4Å: Chain B: D.83, R.180, G.184, N.226, S.230, E.234, R.314, Y.315 Ligands: MG.5, MG.6, MG.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.180, B:N.226, B:N.226, B:N.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helmer, C.P.O. et al., crystal structure of s hydropyrene synthase in its closed conformation. To Be Published

Release Date

2023-10-04

Peptides

Terpene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Terpene synthase

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