SMTL ID : 8b4u.1

The crystal structure of PET46, a PETase enzyme from Candidatus bathyarchaeota

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: G.38, F.39, T.40, G.41, E.45, A.46, L.114, V.239 Ligands: PO4.22 Ligand excluded by PLIP EDO.2: 9 residues within 4Å: Chain A: F.39, S.115, M.116, A.140, L.144, F.148, V.208, I.209 Ligands: PO4.22 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: T.40, G.41, N.42, W.172 Ligands: EDO.5 Ligand excluded by PLIP EDO.4: 9 residues within 4Å: Chain A: R.145, L.149, I.157, L.160, E.161, K.176, F.179, E.180 Ligands: PO4.23 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: N.42, K.43, S.44, D.68, G.73, D.74 Ligands: EDO.3 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: R.159, H.167, Y.173 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: G.203, D.204, S.205, D.206, I.209, P.210, L.211, D.212 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: S.56, I.247, I.250, E.251, L.254 Ligands: EDO.20 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: K.154, I.157, R.158, E.161 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: M.1, V.20, L.24, R.25, G.26, F.103 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: M.1, K.3, V.5, L.18, F.97, L.101, F.103 Ligand excluded by PLIP EDO.12: 8 residues within 4Å: Chain A: E.12, R.70, G.71, D.76, G.77, E.78, D.81, M.82 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: I.123, S.126, K.127, I.185, V.190, R.193 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: G.11, E.12, Q.13, D.76, G.77 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: M.1, I.2, R.55 Ligands: EDO.19 Ligand excluded by PLIP EDO.16: 9 residues within 4Å: Chain A: M.1, V.20, P.21, D.22, D.23, R.55, C.58, N.59 Ligands: EDO.19 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain A: R.222, D.223 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: F.79, G.171, W.172, Y.173 Ligand excluded by PLIP EDO.19: 9 residues within 4Å: Chain A: M.1, I.2, H.19, V.20, A.54, R.55, C.58 Ligands: EDO.15, EDO.16 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: H.52, R.243, T.246, I.247, I.250 Ligands: EDO.8, PO4.24 Ligand excluded by PLIP

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.21: 6 residues within 4Å: Chain A: T.142, K.147, P.210, D.212, G.213, K.216 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.142 Water bridges: A:T.142, A:T.142, A:G.213, A:K.216 Salt bridges: A:K.147 PO4.22: 10 residues within 4Å: Chain A: G.38, F.39, T.40, L.114, S.115, M.116, V.208, H.238 Ligands: EDO.1, EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.39, A:S.115, A:M.116 Salt bridges: A:H.238 PO4.23: 5 residues within 4Å: Chain A: R.145, E.161, K.176, E.180 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.176, A:K.176 Salt bridges: A:K.176 PO4.24: 5 residues within 4Å: Chain A: H.47, H.52, R.243, T.246 Ligands: EDO.20 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.47, A:H.52, A:R.243

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.25: 5 residues within 4Å: Chain A: E.10, R.70, D.81, T.83, G.86 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez-Garcia, P. et al., An archaeal lid-containing feruloyl esterase degrades polyethylene terephthalate. Commun Chem (2023)

Release Date

2023-08-23

Peptides

Alpha/beta hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase