SMTL ID : 8b5h.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (R)-7-((R)-1,2-dihydroxyethyl)-1,3-dimethyl-5-(1-methyl-1H-pyrazol-4-yl)-1,3-dihydro-2H-benzo[d]azepin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:Q.103 EDO.2: 4 residues within 4Å: Chain A: K.87, Y.88, N.89, P.90 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.87, A:N.89

1 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)

7PE.3: 6 residues within 4Å: Chain A: S.7, L.10, K.11, N.14, M.63, E.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11, A:N.14

1 x P4X: (1~{R})-7-[(1~{R})-1,2-bis(oxidanyl)ethyl]-1,3-dimethyl-5-(1-methylpyrazol-4-yl)-1~{H}-3-benzazepin-2-one(Non-covalent)

P4X.4: 10 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, Y.88, N.89, V.95 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.31, A:L.41, A:L.43, A:Y.88, A:V.95, A:V.95, A:V.95 Hydrogen bonds: A:N.89 pi-Stacking: A:W.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Humphreys, P.G. et al., Identification and Optimization of a Ligand-Efficient Benzoazepinone Bromodomain and Extra Terminal (BET) Family Acetyl-Lysine Mimetic into the Oral Candidate Quality Molecule I-BET432. J.Med.Chem. (2022)

Release Date

2022-11-30

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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