SMTL ID : 8b5w.1

Crystal structure of the E3 module from UBR4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.114, C.117, H.163, C.166 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.114, A:C.117, A:H.163, A:C.166

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: V.360, K.361, D.362, Y.363, Y.366, T.430, F.431, L.451 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.361, A:F.431 Water bridges: A:Y.363, A:T.430, A:S.432 EDO.3: 2 residues within 4Å: Chain A: K.298, R.336 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.298, A:R.336 Water bridges: A:R.336, A:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barnsby-Greer, L. et al., UBE2A and UBE2B are recruited by an atypical E3 ligase module in UBR4. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-10-04

Peptides

cDNA FLJ12511 fis, clone NT2RM2001727, highly similar to Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 (UBR4), mRNA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cDNA FLJ12511 fis, clone NT2RM2001727, highly similar to Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 (UBR4), mRNA

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