- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-1-1-1-1-mer
- Ligands
- 34 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 27 x SPO: SPHEROIDENE(Non-covalent)
SPO.5: 12 residues within 4Å:- Chain C: F.31, V.34, A.38, A.41, V.42, W.45
- Chain K: F.17, Q.20
- Chain L: F.49
- Ligands: BCL.7, SPO.8, BCL.31
7 PLIP interactions:5 interactions with chain C, 1 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: C:F.31, C:V.34, C:A.41, C:V.42, C:W.45, L:F.49, K:F.17
SPO.8: 20 residues within 4Å:- Chain A: K.6, I.7, V.10
- Chain D: Q.20, F.23, L.24, L.27, I.31
- Chain K: F.25, H.32
- Chain L: L.20, V.23, Y.24, G.27, L.28, F.31
- Ligands: SPO.5, BCL.7, BCL.31, SPO.35
19 PLIP interactions:7 interactions with chain L, 4 interactions with chain A, 6 interactions with chain D, 2 interactions with chain K- Hydrophobic interactions: L:L.20, L:V.23, L:V.23, L:Y.24, L:Y.24, L:L.28, L:F.31, A:K.6, A:K.6, A:I.7, A:V.10, D:F.23, D:L.24, D:L.24, D:L.27, D:L.27, D:I.31, K:F.25, K:H.32
SPO.9: 21 residues within 4Å:- Chain A: F.23, L.24, L.27, I.34
- Chain D: F.25, V.29, H.32
- Chain E: V.23, Y.24, S.26, G.27, L.28, A.30, F.31
- Chain G: G.19, I.22, M.26
- Ligands: BCL.1, BCL.6, BCL.10, SPO.35
9 PLIP interactions:3 interactions with chain A, 1 interactions with chain G, 3 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: A:F.23, A:L.24, A:L.27, G:I.22, E:A.30, E:F.31, E:F.31, D:F.25, D:H.32
SPO.11: 22 residues within 4Å:- Chain 7: F.25, V.29, H.32, L.33
- Chain B: F.17, Q.20, L.24, L.27, L.30
- Chain F: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain K: K.6, I.7, V.10
- Ligands: BCL.3, SPO.12, SPO.13, BCL.74
19 PLIP interactions:6 interactions with chain B, 8 interactions with chain F, 2 interactions with chain 7, 3 interactions with chain K- Hydrophobic interactions: B:F.17, B:F.17, B:L.24, B:L.24, B:L.27, B:L.30, F:L.20, F:V.23, F:V.23, F:Y.24, F:Y.24, F:L.28, F:F.31, F:F.31, 7:F.25, 7:H.32, K:K.6, K:I.7, K:V.10
SPO.12: 12 residues within 4Å:- Chain B: F.17
- Chain C: F.49
- Chain F: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.2, BCL.4, SPO.11, SPO.32
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain C- Hydrophobic interactions: F:F.31, F:V.34, F:A.41, F:V.42, F:W.45, C:F.49, C:F.49
SPO.13: 13 residues within 4Å:- Chain 5: F.31, V.34, A.38, A.41, V.42, W.45
- Chain 7: Q.20, G.21
- Chain F: F.49
- Ligands: BCL.3, SPO.11, BCL.74, SPO.75
8 PLIP interactions:5 interactions with chain 5, 3 interactions with chain F- Hydrophobic interactions: 5:F.31, 5:V.34, 5:A.38, 5:A.41, 5:V.42, F:F.49, F:F.49, F:F.49
SPO.23: 23 residues within 4Å:- Chain I: W.66, F.67, F.68, I.70, G.71, Y.74, W.75, F.85, I.105, Q.115, S.118, L.119, M.121, A.122, W.156, L.159, G.160, W.170, P.174, Y.176, G.177, I.178
- Ligands: BCL.24
19 PLIP interactions:19 interactions with chain I- Hydrophobic interactions: I:F.67, I:F.67, I:F.67, I:F.68, I:I.70, I:I.70, I:Y.74, I:Y.74, I:I.105, I:L.119, I:A.122, I:W.156, I:L.159, I:W.170, I:W.170, I:P.174, I:Y.176, I:Y.176, I:I.178
SPO.32: 23 residues within 4Å:- Chain B: F.25, H.32, L.33
- Chain C: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain D: K.6, I.7, L.9, V.10
- Chain K: F.17, Q.20, F.23, L.24, L.27
- Chain L: L.7
- Ligands: BCL.2, BCL.4, SPO.12
20 PLIP interactions:5 interactions with chain D, 5 interactions with chain K, 1 interactions with chain B, 8 interactions with chain C, 1 interactions with chain L- Hydrophobic interactions: D:K.6, D:K.6, D:I.7, D:L.9, D:V.10, K:F.17, K:F.17, K:F.23, K:L.24, K:L.27, B:F.25, C:E.19, C:L.20, C:V.23, C:V.23, C:Y.24, C:Y.24, C:F.31, C:F.31, L:L.7
SPO.35: 12 residues within 4Å:- Chain D: F.17
- Chain E: F.49
- Chain L: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.6, SPO.8, SPO.9, BCL.10
8 PLIP interactions:6 interactions with chain L, 2 interactions with chain E- Hydrophobic interactions: L:F.31, L:V.34, L:A.38, L:A.41, L:V.42, L:W.45, E:F.49, E:F.49
SPO.37: 19 residues within 4Å:- Chain M: F.17, Q.20, F.23, L.24, L.27, I.34
- Chain O: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain R: F.25, H.32, L.36, W.43
- Ligands: BCL.40, BCL.44
16 PLIP interactions:2 interactions with chain R, 8 interactions with chain O, 6 interactions with chain M- Hydrophobic interactions: R:F.25, R:W.43, O:E.19, O:L.20, O:V.23, O:V.23, O:Y.24, O:L.28, O:F.31, O:F.31, M:F.17, M:F.17, M:F.23, M:L.24, M:L.24, M:L.27
SPO.38: 16 residues within 4Å:- Chain M: F.25, H.32, L.33
- Chain N: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain P: Q.20, F.23, L.24, L.27
- Ligands: BCL.36, SPO.39, BCL.41
19 PLIP interactions:2 interactions with chain M, 12 interactions with chain N, 5 interactions with chain P- Hydrophobic interactions: M:F.25, M:H.32, N:L.20, N:L.20, N:V.23, N:V.23, N:Y.24, N:Y.24, N:Y.24, N:L.28, N:L.28, N:L.28, N:F.31, N:F.31, P:F.23, P:F.23, P:L.24, P:L.27, P:L.27
SPO.39: 13 residues within 4Å:- Chain N: F.31, V.34, A.38, A.41, V.42, W.45
- Chain P: G.21, L.24
- Chain U: F.49
- Ligands: SPO.38, BCL.42, SPO.46, BCL.47
10 PLIP interactions:7 interactions with chain N, 1 interactions with chain P, 2 interactions with chain U- Hydrophobic interactions: N:F.31, N:V.34, N:A.38, N:A.41, N:V.42, N:W.45, N:W.45, P:L.24, U:F.49, U:F.49
SPO.46: 20 residues within 4Å:- Chain P: F.25, H.32
- Chain S: F.17, Q.20, F.23, L.24, L.27
- Chain U: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain V: K.6, I.7, V.10
- Ligands: SPO.39, BCL.42, BCL.47, SPO.50
23 PLIP interactions:12 interactions with chain U, 2 interactions with chain P, 6 interactions with chain S, 3 interactions with chain V- Hydrophobic interactions: U:L.20, U:L.20, U:V.23, U:V.23, U:Y.24, U:Y.24, U:Y.24, U:L.28, U:L.28, U:F.31, U:F.31, U:F.31, P:F.25, P:H.32, S:F.17, S:F.23, S:F.23, S:L.24, S:L.27, S:L.27, V:K.6, V:I.7, V:V.10
SPO.49: 13 residues within 4Å:- Chain T: F.31, V.34, A.38, A.41, V.42, W.45
- Chain V: F.17, Q.20
- Chain Y: F.49
- Ligands: BCL.51, SPO.52, BCL.54, SPO.58
8 PLIP interactions:6 interactions with chain T, 2 interactions with chain Y- Hydrophobic interactions: T:F.31, T:V.34, T:A.38, T:A.41, T:V.42, T:W.45, Y:F.49, Y:F.49
SPO.50: 12 residues within 4Å:- Chain S: Q.20
- Chain T: F.49
- Chain U: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.45, SPO.46, BCL.48, SPO.52
7 PLIP interactions:2 interactions with chain T, 5 interactions with chain U- Hydrophobic interactions: T:F.49, T:F.49, U:F.31, U:V.34, U:A.38, U:A.41, U:V.42
SPO.52: 24 residues within 4Å:- Chain S: F.25, H.32, L.33
- Chain T: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain V: F.17, Q.20, F.23, L.24, L.27, I.31
- Chain W: F.4, K.6, I.7, V.10
- Ligands: BCL.45, BCL.48, SPO.49, SPO.50
21 PLIP interactions:4 interactions with chain W, 9 interactions with chain V, 7 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: W:F.4, W:K.6, W:K.6, W:I.7, V:F.17, V:F.17, V:F.23, V:F.23, V:L.24, V:L.24, V:L.27, V:L.27, V:I.31, T:E.19, T:L.20, T:V.23, T:V.23, T:V.23, T:L.28, T:F.31, S:F.25
SPO.55: 13 residues within 4Å:- Chain W: F.17, Q.20
- Chain X: F.49
- Chain Y: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.53, BCL.56, SPO.58, SPO.60
8 PLIP interactions:4 interactions with chain Y, 3 interactions with chain X, 1 interactions with chain W- Hydrophobic interactions: Y:F.31, Y:V.34, Y:A.38, Y:V.42, X:F.49, X:F.49, X:F.49, W:F.17
SPO.57: 11 residues within 4Å:- Chain 2: F.49
- Chain X: F.31, V.34, A.38, A.41, V.42, W.45
- Chain Z: Q.20
- Ligands: BCL.59, SPO.60, BCL.66
7 PLIP interactions:5 interactions with chain X, 2 interactions with chain 2- Hydrophobic interactions: X:F.31, X:V.34, X:A.38, X:A.41, X:V.42, 2:F.49, 2:F.49
SPO.58: 23 residues within 4Å:- Chain V: F.25, V.29, H.32
- Chain W: F.17, Q.20, F.23, L.24, L.27
- Chain X: L.7
- Chain Y: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain Z: K.6, I.7, V.10
- Ligands: SPO.49, BCL.51, BCL.54, SPO.55
21 PLIP interactions:7 interactions with chain W, 8 interactions with chain Y, 4 interactions with chain Z, 1 interactions with chain X, 1 interactions with chain V- Hydrophobic interactions: W:F.17, W:F.17, W:F.23, W:F.23, W:L.24, W:L.27, W:L.27, Y:E.19, Y:L.20, Y:L.20, Y:Y.24, Y:Y.24, Y:Y.24, Y:L.28, Y:F.31, Z:K.6, Z:K.6, Z:I.7, Z:V.10, X:L.7, V:F.25
SPO.60: 22 residues within 4Å:- Chain 0: K.6, I.7
- Chain 2: L.7
- Chain W: F.25, V.29, H.32
- Chain X: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain Z: F.17, Q.20, F.23, L.24, L.27
- Ligands: BCL.53, SPO.55, BCL.56, SPO.57
24 PLIP interactions:8 interactions with chain Z, 3 interactions with chain 0, 10 interactions with chain X, 2 interactions with chain W, 1 interactions with chain 2- Hydrophobic interactions: Z:F.17, Z:F.17, Z:F.23, Z:F.23, Z:L.24, Z:L.24, Z:L.27, Z:L.27, 0:K.6, 0:K.6, 0:I.7, X:E.19, X:L.20, X:V.23, X:V.23, X:V.23, X:Y.24, X:Y.24, X:L.28, X:F.31, X:F.31, W:F.25, W:H.32, 2:L.7
SPO.62: 20 residues within 4Å:- Chain 0: F.17, Q.20, F.23, L.24, L.27
- Chain 2: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain 3: K.6, I.7, V.10
- Chain Z: F.25, H.32, L.33
- Ligands: BCL.59, SPO.65, BCL.66
21 PLIP interactions:10 interactions with chain 2, 3 interactions with chain 3, 6 interactions with chain 0, 2 interactions with chain Z- Hydrophobic interactions: 2:L.20, 2:L.20, 2:V.23, 2:V.23, 2:Y.24, 2:Y.24, 2:Y.24, 2:L.28, 2:F.31, 2:F.31, 3:K.6, 3:I.7, 3:V.10, 0:F.17, 0:F.17, 0:F.23, 0:L.24, 0:L.27, 0:L.27, Z:F.25, Z:H.32
SPO.64: 13 residues within 4Å:- Chain 1: F.31, V.34, A.38, A.41, V.42, W.45
- Chain 3: Q.20, G.21
- Chain 6: F.49
- Ligands: BCL.67, SPO.68, BCL.70, SPO.73
8 PLIP interactions:6 interactions with chain 1, 2 interactions with chain 6- Hydrophobic interactions: 1:F.31, 1:V.34, 1:A.38, 1:A.41, 1:V.42, 1:W.45, 6:F.49, 6:F.49
SPO.65: 11 residues within 4Å:- Chain 0: F.17
- Chain 1: F.49
- Chain 2: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.61, SPO.62, BCL.63
8 PLIP interactions:5 interactions with chain 2, 3 interactions with chain 1- Hydrophobic interactions: 2:F.31, 2:V.34, 2:A.41, 2:V.42, 2:W.45, 1:F.49, 1:F.49, 1:F.49
SPO.68: 20 residues within 4Å:- Chain 0: F.25, H.32
- Chain 1: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain 3: F.17, Q.20, F.23, L.24, L.27
- Chain 4: K.6, I.7, V.10
- Ligands: BCL.61, BCL.63, SPO.64
18 PLIP interactions:7 interactions with chain 1, 4 interactions with chain 4, 5 interactions with chain 3, 2 interactions with chain 0- Hydrophobic interactions: 1:L.20, 1:V.23, 1:Y.24, 1:Y.24, 1:L.28, 1:F.31, 1:F.31, 4:K.6, 4:K.6, 4:I.7, 4:V.10, 3:F.17, 3:F.17, 3:F.23, 3:L.24, 3:L.27, 0:F.25, 0:H.32
SPO.71: 12 residues within 4Å:- Chain 4: Q.20
- Chain 5: F.49
- Chain 6: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.69, BCL.72, SPO.73, SPO.75
8 PLIP interactions:5 interactions with chain 6, 3 interactions with chain 5- Hydrophobic interactions: 6:F.31, 6:A.38, 6:A.41, 6:V.42, 6:W.45, 5:F.49, 5:F.49, 5:F.49
SPO.73: 21 residues within 4Å:- Chain 3: F.25, H.32, L.33
- Chain 4: Q.20, F.23, L.24, L.27
- Chain 6: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain 7: K.6, I.7, V.10
- Ligands: SPO.64, BCL.67, BCL.70, SPO.71
19 PLIP interactions:8 interactions with chain 6, 4 interactions with chain 7, 2 interactions with chain 3, 5 interactions with chain 4- Hydrophobic interactions: 6:E.19, 6:L.20, 6:L.20, 6:V.23, 6:V.23, 6:Y.24, 6:Y.24, 6:F.31, 7:K.6, 7:K.6, 7:I.7, 7:V.10, 3:F.25, 3:H.32, 4:F.23, 4:L.24, 4:L.24, 4:L.27, 4:L.27
SPO.75: 23 residues within 4Å:- Chain 4: F.25, H.32, L.33
- Chain 5: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain 7: F.17, Q.20, F.23, L.24, L.27
- Chain B: K.6, I.7, V.10
- Chain F: L.7
- Ligands: SPO.13, BCL.69, SPO.71, BCL.72
21 PLIP interactions:8 interactions with chain 5, 4 interactions with chain B, 1 interactions with chain F, 7 interactions with chain 7, 1 interactions with chain 4- Hydrophobic interactions: 5:E.19, 5:L.20, 5:V.23, 5:V.23, 5:V.23, 5:Y.24, 5:Y.24, 5:F.31, B:K.6, B:K.6, B:I.7, B:V.10, F:L.7, 7:F.17, 7:F.17, 7:F.23, 7:F.23, 7:L.24, 7:L.24, 7:L.27, 4:F.25
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.15: 30 residues within 4Å:- Chain H: T.39, F.42, A.43, G.46, I.50, A.94, F.98, W.101, E.105, I.118, A.121, F.122, A.125, F.147, Y.149, G.150, I.151, H.154, L.239, V.242
- Chain I: Y.209, A.212, L.213, A.216, M.217, W.251, M.255
- Ligands: BCL.14, BCL.20, U10.22
14 PLIP interactions:10 interactions with chain H, 4 interactions with chain I- Hydrophobic interactions: H:A.43, H:I.50, H:A.94, H:A.121, H:F.122, H:F.122, H:F.147, H:Y.149, H:L.239, H:V.242, I:Y.209, I:A.212, I:L.213, I:A.216
BPH.27: 24 residues within 4Å:- Chain H: F.182, A.185, W.186, A.189, M.190, L.220, M.221
- Chain I: S.59, L.60, G.63, A.64, F.67, F.68, S.124, W.128, V.132, M.145, A.148, F.149, A.152, A.272, T.276
- Ligands: BCL.24, BCL.26
13 PLIP interactions:9 interactions with chain I, 4 interactions with chain H- Hydrophobic interactions: I:L.60, I:F.67, I:F.67, I:F.68, I:W.128, I:A.148, I:F.149, I:F.149, I:T.276, H:F.182, H:A.185, H:A.189
- pi-Stacking: H:W.186
- 4 x U10: UBIQUINONE-10(Non-covalent)
U10.16: 20 residues within 4Å:- Chain H: S.179, L.180, T.183, W.186, M.190, H.191, L.194, E.213, D.214, F.217, Y.223, S.224, V.225, G.226, T.227, I.230, L.233, L.237
- Ligands: U10.17, BCL.24
16 PLIP interactions:16 interactions with chain H- Hydrophobic interactions: H:L.180, H:W.186, H:M.190, H:L.194, H:F.217, H:F.217, H:F.217, H:Y.223, H:V.225, H:V.225, H:I.230, H:I.230, H:L.233, H:L.237
- Hydrogen bonds: H:V.225, H:G.226
U10.17: 10 residues within 4Å:- Chain H: P.172, M.175, L.176, S.179, W.264
- Chain I: F.90, I.178, F.179
- Ligands: U10.16, BCL.24
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:M.175
U10.18: 9 residues within 4Å:- Chain H: W.264, W.267
- Chain I: M.86, R.87, D.88, L.89, F.90, F.91, F.179
8 PLIP interactions:4 interactions with chain I, 4 interactions with chain H- Hydrophobic interactions: I:L.89, I:F.90, H:W.267, H:W.267
- Hydrogen bonds: I:L.89, I:F.90
- pi-Stacking: H:W.267, H:W.267
U10.22: 26 residues within 4Å:- Chain H: F.30, Y.31, V.32, G.36, I.40, W.101, R.104
- Chain I: M.217, H.218, T.221, I.222, A.247, A.248, W.251, M.255, F.257, N.258, A.259, T.260, M.261, I.264, W.267
- Ligands: BCL.14, BPH.15, 3PE.19, 3PE.30
17 PLIP interactions:10 interactions with chain I, 7 interactions with chain H- Hydrophobic interactions: I:M.217, I:W.251, I:F.257, I:F.257, I:A.259, I:I.264, I:W.267, I:W.267, H:F.30, H:F.30, H:F.30, H:V.32, H:I.40, H:I.40, H:W.101
- Hydrogen bonds: I:T.221, I:A.259
- 7 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.19: 12 residues within 4Å:- Chain H: P.29, F.30
- Chain J: N.52, G.54, P.55, F.56
- Chain K: R.15
- Ligands: BCL.14, U10.22, 3PE.30, 3PE.33, 3PE.34
6 PLIP interactions:4 interactions with chain J, 2 interactions with chain K- Hydrophobic interactions: J:F.56, J:F.56
- Hydrogen bonds: J:N.52, J:G.54
- Salt bridges: K:R.15, K:R.15
3PE.25: 15 residues within 4Å:- Chain H: N.200, P.201
- Chain I: G.142, H.144, W.147, S.151, W.154, R.266, W.270, V.273, L.277
- Chain J: S.19, F.20, F.23, Y.30
17 PLIP interactions:12 interactions with chain I, 4 interactions with chain J, 1 interactions with chain H- Hydrophobic interactions: I:W.147, I:W.154, I:W.154, I:W.154, I:W.154, I:W.270, I:V.273, I:L.277, I:L.277, J:F.23, J:F.23, J:F.23, J:Y.30
- Salt bridges: I:H.144, I:H.144, I:R.266
- Hydrogen bonds: H:N.200
3PE.28: 24 residues within 4Å:- Chain I: A.61, A.65, F.68, T.69, V.72, W.73, W.75, Y.76, F.80, L.108, K.109, V.113
- Chain V: V.29, L.33
- Chain W: F.25, L.26, V.29, L.30, L.33, I.34, L.36, S.37, T.45
- Chain Z: L.30
23 PLIP interactions:14 interactions with chain I, 8 interactions with chain W, 1 interactions with chain V- Hydrophobic interactions: I:A.65, I:F.68, I:T.69, I:W.73, I:W.75, I:W.75, I:Y.76, I:Y.76, I:Y.76, I:F.80, I:V.113, W:F.25, W:V.29, W:L.30, W:L.33, W:L.33, W:L.33, W:I.34, V:L.33
- Hydrogen bonds: I:K.109, W:N.42
- Salt bridges: I:K.109, I:K.109
3PE.29: 16 residues within 4Å:- Chain H: Q.63, W.152
- Chain I: P.199, L.203, A.207, M.274, W.296, H.300, Y.302
- Chain J: S.14, I.17, W.18, F.20, W.21
- Ligands: BCL.20, 3PE.30
11 PLIP interactions:4 interactions with chain J, 5 interactions with chain I, 2 interactions with chain H- Hydrophobic interactions: J:W.18, J:F.20, I:L.203, I:A.207, I:M.274, I:Y.302, H:Q.63, H:W.152
- Hydrogen bonds: J:S.14, J:S.14
- Salt bridges: I:H.300
3PE.30: 22 residues within 4Å:- Chain H: F.30
- Chain I: R.252, M.255, G.256, F.257, W.267, W.270, M.271
- Chain J: L.27, I.28, L.31, Q.32, M.36, Y.40, Q.53, G.54, P.55, F.56
- Ligands: 3PE.19, BCL.20, U10.22, 3PE.29
17 PLIP interactions:8 interactions with chain I, 9 interactions with chain J- Hydrophobic interactions: I:F.257, I:F.257, I:F.257, I:W.267, I:W.267, I:W.270, I:M.271, J:L.27, J:I.28, J:L.31, J:Q.32, J:F.56
- Salt bridges: I:R.252
- Hydrogen bonds: J:Q.32, J:Y.40, J:Q.53, J:F.56
3PE.33: 16 residues within 4Å:- Chain D: R.15, V.16
- Chain H: V.27, G.28
- Chain J: N.52, E.97
- Chain K: D.12, R.14, R.15, V.18, A.19, G.21, V.22
- Ligands: 3PE.19, BCL.31, 3PE.34
10 PLIP interactions:3 interactions with chain D, 7 interactions with chain K- Hydrophobic interactions: D:R.15, D:V.16, K:R.15, K:V.18, K:A.19, K:V.22
- Salt bridges: D:R.15, K:R.14, K:R.15
- Hydrogen bonds: K:D.12
3PE.34: 16 residues within 4Å:- Chain B: R.14, V.18, G.21, V.22
- Chain J: N.52, Q.53, G.54
- Chain K: F.11, R.15, V.16, A.19, V.22, F.23
- Ligands: BCL.2, 3PE.19, 3PE.33
9 PLIP interactions:1 interactions with chain B, 3 interactions with chain J, 5 interactions with chain K- Hydrophobic interactions: B:V.18, K:V.22, K:F.23, K:F.23
- Hydrogen bonds: J:Q.53, J:G.54, J:G.54
- Salt bridges: K:R.15, K:R.15
- 1 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bracun, L. et al., Cryo-EM structure of a monomeric RC-LH1-PufX supercomplex with high-carotenoid content from Rhodobacter capsulatus. Structure (2023)
- Release Date
- 2023-02-01
- Peptides
- Light-harvesting protein B-870 alpha chain: ABDKMPRSVWZ0347
LH1 beta chain: CEFLNOQTUXY1256
Intrinsic membrane protein PufX: G
Reaction center protein L chain: H
Reaction center protein M chain: I
Reaction center protein H chain: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
aB
eD
bK
dM
tP
sR
uS
rV
oW
nZ
k0
j3
i4
g7
fC
DE
AF
EL
BN
SO
TQ
UT
OU
RX
KY
N1
I2
J5
F6
GG
XH
LI
MJ
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-1-1-1-1-mer
- Ligands
- 34 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 27 x SPO: SPHEROIDENE(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 4 x U10: UBIQUINONE-10(Non-covalent)
- 7 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bracun, L. et al., Cryo-EM structure of a monomeric RC-LH1-PufX supercomplex with high-carotenoid content from Rhodobacter capsulatus. Structure (2023)
- Release Date
- 2023-02-01
- Peptides
- Light-harvesting protein B-870 alpha chain: ABDKMPRSVWZ0347
LH1 beta chain: CEFLNOQTUXY1256
Intrinsic membrane protein PufX: G
Reaction center protein L chain: H
Reaction center protein M chain: I
Reaction center protein H chain: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
aB
eD
bK
dM
tP
sR
uS
rV
oW
nZ
k0
j3
i4
g7
fC
DE
AF
EL
BN
SO
TQ
UT
OU
RX
KY
N1
I2
J5
F6
GG
XH
LI
MJ
H - Membrane
-
We predict this structure to be a membrane protein.