SMTL ID : 8b65.1

Structure of rsCherry crystallized in anaerobic conditions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: A.183, S.184, N.234, I.235, K.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.184, A:I.235

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 6 residues within 4Å: Chain A: T.144, V.145, T.146, K.161, L.162, R.163 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: R.76, T.81 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.76, A:R.76, A:E.79, A:T.81 EDO.5: 2 residues within 4Å: Chain A: N.243, D.245 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.245, A:T.247

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: A.230, Y.231, N.232, H.259, S.260, T.261, G.262 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.259, A:S.260, A:S.260, A:G.262 Water bridges: A:N.232, A:N.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bui, T.Y.H. et al., Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry. Int.J.Biol.Macromol. (2023)

Release Date

2023-04-05

Peptides

rsCherry: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rsCherry

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