SMTL ID : 8b6m.2 (1 other biounit)

Tankyrase 2 in complex with an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.138, H.141, C.146, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.138, A:H.141, A:C.146, A:C.149

1 x OY6: ~{N}-(2-methoxyphenyl)-4-[[2-(4-oxidanylidene-3~{H}-quinazolin-2-yl)ethyl-(thiophen-2-ylmethyl)carbamoyl]amino]benzamide(Non-covalent)

OY6.2: 22 residues within 4Å: Chain A: F.87, H.88, G.89, P.91, F.92, A.95, I.96, K.99, G.100, F.101, D.102, H.105, Y.107, I.116, Y.117, F.118, A.119, K.124, S.125, Y.128, I.132 Chain B: E.24 25 PLIP interactions: 23 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.92, A:F.92, A:A.95, A:I.96, A:K.99, A:F.101, A:D.102, A:H.105, A:I.116, A:Y.117, A:Y.117, A:A.119, A:K.124, A:K.124, A:Y.128, A:Y.128, A:I.132, B:E.24, B:E.24 Hydrogen bonds: A:G.89, A:G.89, A:D.102, A:Y.117 pi-Stacking: A:H.105, A:Y.128

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: R.34, H.36, R.37, D.38, K.124, Q.127, M.170 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.37, A:D.38, A:Q.127 Water bridges: A:R.34, A:D.38, B:N.18 Salt bridges: A:R.34, A:H.36, A:K.124 SO4.4: 4 residues within 4Å: Chain A: N.47, R.48 Chain B: P.46, E.47 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.47, B:E.47 Water bridges: A:N.47 Salt bridges: A:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bosetti, C. et al., Tankyrase 2 in complex with an inhibitor. To Be Published

Release Date

2023-10-11

Peptides

Poly [ADP-ribose] polymerase tankyrase-2: A
Poly [ADP-ribose] polymerase tankyrase-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Poly [ADP-ribose] polymerase tankyrase-2

Poly [ADP-ribose] polymerase tankyrase-2

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