SMTL ID : 8b7d.1

Luminal domain of TMEM106B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: K.31, I.33, N.58, M.99, Q.101 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.33 NAG.2: 4 residues within 4Å: Chain A: Y.39, V.40, N.163 Ligands: NAG.3 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: Y.39, N.52 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.39 Hydrogen bonds: A:N.52 NAG.4: 4 residues within 4Å: Chain A: E.70, N.71, T.73, R.87 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.73 Hydrogen bonds: A:E.70, A:E.70, A:R.87 Water bridges: A:N.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baggen, J. et al., TMEM106B is a receptor mediating ACE2-independent SARS-CoV-2 cell entry. Cell (2023)

Release Date

2023-07-19

Peptides

Transmembrane protein 106B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transmembrane protein 106B