SMTL ID : 8b8e.1 (4 other biounits)

Wild-type GH11 from Blastobotrys mokoenaii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.184, A.187, Q.188 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: N.39, G.40, Y.41, W.79, V.218 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.79 EDO.4: 6 residues within 4Å: Chain A: K.146, D.162, Y.164, G.190, L.191, Q.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.146, A:G.190, A:Q.192 Water bridges: A:D.162 EDO.6: 9 residues within 4Å: Chain A: W.46, Y.104, W.106, E.113, P.153, S.154, F.161 Ligands: EDO.7, EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113 Water bridges: A:R.149 EDO.7: 9 residues within 4Å: Chain A: S.44, W.46, V.74, Y.104, W.106, E.113, I.155, Y.198 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.104, A:W.106, A:Y.198 Water bridges: A:S.44 EDO.8: 12 residues within 4Å: Chain A: N.72, V.74, Y.104, E.113, Y.115, R.149, A.152, P.153, F.161, Q.163, E.204 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.72, A:R.149, A:R.149, A:Q.163, A:E.204 EDO.9: 5 residues within 4Å: Chain A: W.46, D.48, N.72, P.153, Y.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: T.68, N.69, S.96, S.208, S.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.69, A:S.96 Water bridges: A:S.209

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 6 residues within 4Å: Chain A: D.136, S.137, D.138, G.139, S.140, T.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.139, A:S.140, A:T.141, A:T.141

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 4 residues within 4Å: Chain A: T.108, N.109, L.111, E.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.109, A:L.111, A:E.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ravn, J.L. et al., Yeasts Have Evolved Divergent Enzyme Strategies To Deconstruct and Metabolize Xylan. Microbiol Spectr (2023)

Release Date

2023-05-17

Peptides

BmGH11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BmGH11

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