SMTL ID : 8bab.1

Crystal structure of JAK2 JH2-V617F in complex with CB76

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: S.70, H.71 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.70, A:S.70 GOL.2: 9 residues within 4Å: Chain A: S.70, H.71, K.72, L.74, V.75, L.76, K.161 Ligands: GOL.1, GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.71, A:L.74, A:V.75, A:K.161 GOL.3: 6 residues within 4Å: Chain A: N.138, C.140, K.142, R.180, W.183, K.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.138 Water bridges: A:R.180, A:R.180 GOL.4: 2 residues within 4Å: Chain A: K.72, W.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.72 Water bridges: A:H.73 GOL.5: 6 residues within 4Å: Chain A: L.76, Y.78, E.92, I.147, K.161 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.161 Water bridges: A:Y.78, A:Y.78 GOL.6: 4 residues within 4Å: Chain A: K.72, I.147, R.148, F.159 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.148 GOL.7: 5 residues within 4Å: Chain A: E.14, L.16, K.26, F.93 Ligands: Q8N.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.14, A:K.26

1 x Q8N: 6-[(1-methylimidazol-2-yl)sulfanylmethyl]-~{N}4-(3-methylphenyl)-1,3,5-triazine-2,4-diamine(Non-covalent)

Q8N.8: 19 residues within 4Å: Chain A: L.16, G.17, Q.18, G.19, I.24, L.44, K.46, V.75, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, K.142, L.145 Ligands: GOL.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.16 Hydrogen bonds: A:Q.91, A:V.94, A:V.94 Water bridges: A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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