SMTL ID : 8bak.1

Crystal structure of JAK2 JH2-V617F in complex with Reversine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.72, H.73, W.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.72 GOL.2: 7 residues within 4Å: Chain A: S.70, H.71, K.72, L.74, V.75, L.76, K.161 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.70, A:H.71, A:H.71, A:L.74, A:K.161 GOL.3: 6 residues within 4Å: Chain A: N.138, C.140, K.142, R.180, W.183, K.217 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.138, A:K.142 Water bridges: A:R.180, A:R.180 GOL.4: 4 residues within 4Å: Chain A: K.72, I.147, R.148, F.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148 Water bridges: A:R.148 GOL.5: 6 residues within 4Å: Chain A: L.248, N.251, P.261, A.265, I.266, D.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.251, A:D.269

1 x AD5: N~6~-cyclohexyl-N~2~-(4-morpholin-4-ylphenyl)-9H-purine-2,6-diamine(Non-covalent)

AD5.6: 18 residues within 4Å: Chain A: L.16, I.24, L.44, K.46, V.75, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, T.101, K.105, K.142, L.145, S.163 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.93 Hydrogen bonds: A:K.46, A:E.92, A:V.94, A:V.94 Water bridges: A:K.142, A:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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