SMTL ID : 8bbx.1 (1 other biounit)

Structure of prolyl endoprotease from Aspergillus niger CBS 109712 in space group C222(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: E.31, Y.32, N.59, Q.68, Y.460 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: N.314, S.316, S.317, P.318 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: P.152, G.153, N.405 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2: 25 residues within 4Å: Chain A: A.183, Q.184, N.185, D.242, F.243, A.244, T.245, G.246, Y.247, F.251, C.254, D.255, E.258, V.260, E.261, A.262, G.263, A.264, A.265, T.267, P.268, P.270, F.449, A.461, N.462 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.260, A:T.267 Hydrogen bonds: A:D.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pijning, T. et al., Structural and time-resolved mechanistic investigations of protein hydrolysis by the acidic proline-specific endoprotease from Aspergillus niger. Protein Sci. (2024)

Release Date

2023-12-20

Peptides

Endoprotease endo-Pro: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoprotease endo-Pro

Related Entries With Identical Sequence