- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 21 residues within 4Å:- Chain A: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Chain I: E.62, T.67, W.68, N.125
- Ligands: MG.1
29 PLIP interactions:25 interactions with chain A, 4 interactions with chain I- Hydrogen bonds: A:T.175, A:T.175, A:K.177, A:G.382, A:G.404, A:G.405, I:T.67, I:T.67, I:N.125
- Water bridges: A:T.175, A:T.175, A:K.179, A:K.179, A:R.296, A:R.296, A:G.330, A:K.335, A:S.380, A:G.381, A:I.383, A:G.406, I:E.62
- Salt bridges: A:K.177, A:K.177, A:K.179, A:R.296, A:H.328, A:K.335, A:K.335
CAP.28: 22 residues within 4Å:- Chain C: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, F.403, G.404, G.405
- Chain O: E.62, T.67, W.68, N.125
- Ligands: MG.27
32 PLIP interactions:28 interactions with chain C, 4 interactions with chain O- Hydrogen bonds: C:T.175, C:T.175, C:K.177, C:E.206, C:S.380, C:G.382, C:G.404, C:G.405, O:T.67, O:T.67, O:N.125
- Water bridges: C:T.175, C:T.175, C:K.179, C:K.179, C:K.179, C:R.296, C:R.296, C:R.296, C:G.330, C:S.380, C:G.381, C:I.383, C:G.406, O:E.62
- Salt bridges: C:K.177, C:K.177, C:K.179, C:R.296, C:H.328, C:K.335, C:K.335
CAP.50: 21 residues within 4Å:- Chain E: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Chain M: E.62, T.67, W.68, N.125
- Ligands: MG.49
29 PLIP interactions:27 interactions with chain E, 2 interactions with chain M- Hydrogen bonds: E:T.175, E:K.177, E:E.206, E:S.380, E:G.381, E:G.382, E:G.404, E:G.405, M:T.67, M:N.125
- Water bridges: E:T.175, E:T.175, E:K.179, E:K.179, E:K.179, E:K.179, E:R.296, E:R.296, E:G.330, E:S.380, E:I.383, E:G.406
- Salt bridges: E:K.177, E:K.177, E:K.179, E:R.296, E:H.328, E:K.335, E:K.335
CAP.70: 21 residues within 4Å:- Chain G: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Chain K: E.62, T.67, W.68, N.125
- Ligands: MG.69
28 PLIP interactions:26 interactions with chain G, 2 interactions with chain K- Hydrogen bonds: G:T.175, G:T.175, G:K.177, G:G.382, G:G.404, G:G.405, K:T.67, K:N.125
- Water bridges: G:T.175, G:T.175, G:K.179, G:K.179, G:K.179, G:K.179, G:R.296, G:R.296, G:G.330, G:S.380, G:G.381, G:I.383, G:G.406
- Salt bridges: G:K.177, G:K.177, G:K.179, G:R.296, G:H.328, G:K.335, G:K.335
CAP.92: 21 residues within 4Å:- Chain A: E.62, T.67, W.68, N.125
- Chain I: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Ligands: MG.91
28 PLIP interactions:25 interactions with chain I, 3 interactions with chain A- Hydrogen bonds: I:T.175, I:K.177, I:G.382, I:G.404, I:G.405, A:T.67, A:T.67, A:N.125
- Water bridges: I:T.175, I:T.175, I:K.179, I:K.179, I:K.179, I:R.296, I:R.296, I:G.330, I:K.335, I:S.380, I:G.381, I:I.383, I:G.406
- Salt bridges: I:K.177, I:K.177, I:K.179, I:R.296, I:H.328, I:K.335, I:K.335
CAP.118: 22 residues within 4Å:- Chain G: E.62, T.67, W.68, N.125
- Chain K: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, F.403, G.404, G.405
- Ligands: MG.117
31 PLIP interactions:28 interactions with chain K, 3 interactions with chain G- Hydrogen bonds: K:T.175, K:K.177, K:E.206, K:S.380, K:G.382, K:G.404, K:G.405, G:T.67, G:T.67, G:N.125
- Water bridges: K:T.175, K:T.175, K:K.179, K:K.179, K:K.179, K:K.179, K:R.296, K:R.296, K:R.296, K:G.330, K:S.380, K:G.381, K:I.383, K:G.406
- Salt bridges: K:K.177, K:K.177, K:K.179, K:R.296, K:H.328, K:K.335, K:K.335
CAP.140: 21 residues within 4Å:- Chain E: E.62, T.67, W.68, N.125
- Chain M: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Ligands: MG.139
30 PLIP interactions:28 interactions with chain M, 2 interactions with chain E- Hydrogen bonds: M:T.175, M:T.175, M:K.177, M:E.206, M:S.380, M:G.381, M:G.382, M:G.404, M:G.405, E:T.67, E:N.125
- Water bridges: M:T.175, M:T.175, M:K.179, M:K.179, M:K.179, M:K.179, M:R.296, M:R.296, M:G.330, M:S.380, M:I.383, M:G.406
- Salt bridges: M:K.177, M:K.177, M:K.179, M:R.296, M:H.328, M:K.335, M:K.335
CAP.160: 21 residues within 4Å:- Chain C: E.62, T.67, W.68, N.125
- Chain O: T.175, K.177, K.179, K.203, D.205, E.206, H.295, R.296, H.328, K.335, L.336, S.380, G.381, G.382, G.404, G.405
- Ligands: MG.159
27 PLIP interactions:24 interactions with chain O, 3 interactions with chain C- Hydrogen bonds: O:T.175, O:K.177, O:G.382, O:G.404, O:G.405, C:T.67, C:N.125
- Water bridges: O:T.175, O:T.175, O:K.179, O:K.179, O:K.179, O:R.296, O:R.296, O:G.330, O:S.380, O:G.381, O:I.383, O:G.406, C:E.62
- Salt bridges: O:K.177, O:K.177, O:K.179, O:R.296, O:H.328, O:K.335, O:K.335
- 134 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: N.288, D.289
- Chain G: K.217, F.258
- Chain H: S.118
Ligand excluded by PLIPEDO.4: 5 residues within 4Å:- Chain A: V.159, R.373
- Chain G: P.212, F.213, M.214
Ligand excluded by PLIPEDO.5: 5 residues within 4Å:- Chain A: P.212, F.213, M.214
- Chain C: V.159, R.373
Ligand excluded by PLIPEDO.6: 4 residues within 4Å:- Chain A: E.90, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.7: 7 residues within 4Å:- Chain A: V.159, R.163
- Chain G: E.218, L.221, Y.222
- Chain H: R.119
- Ligands: EDO.25
Ligand excluded by PLIPEDO.8: 4 residues within 4Å:- Chain A: R.196, G.197, Q.415, T.419
Ligand excluded by PLIPEDO.9: 8 residues within 4Å:- Chain A: V.144, D.368, A.370, S.371
- Chain B: R.89
- Chain K: T.36, I.107, D.108
Ligand excluded by PLIPEDO.10: 8 residues within 4Å:- Chain A: I.9, Y.14, S.16, V.70, V.71, W.72
- Chain I: I.408, G.409
Ligand excluded by PLIPEDO.11: 3 residues within 4Å:- Chain A: R.141, F.365, Q.366
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: G.113, Q.279, I.283
- Chain I: A.247, E.251
Ligand excluded by PLIPEDO.13: 8 residues within 4Å:- Chain A: K.148, Q.151, A.370, S.371, L.372
- Chain G: P.212, R.215
- Chain K: E.112
Ligand excluded by PLIPEDO.14: 7 residues within 4Å:- Chain A: E.112
- Chain I: R.215
- Chain K: L.147, K.148, F.150, L.372
- Ligands: EDO.127
Ligand excluded by PLIPEDO.15: 2 residues within 4Å:- Chain A: P.443, R.447
Ligand excluded by PLIPEDO.20: 8 residues within 4Å:- Chain B: D.40, E.134, R.137
- Chain H: F.109, R.110, L.111
- Ligands: EDO.23, EDO.83
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain B: E.115, R.119
- Chain C: I.231, K.238, G.263
- Chain D: R.44
Ligand excluded by PLIPEDO.22: 7 residues within 4Å:- Chain A: A.232, A.233
- Chain B: M.1, G.108, F.109
- Chain D: E.134
- Ligands: EDO.44
Ligand excluded by PLIPEDO.23: 8 residues within 4Å:- Chain B: T.38, E.39, N.45, F.47, E.49, E.134
- Chain G: R.229
- Ligands: EDO.20
Ligand excluded by PLIPEDO.24: 7 residues within 4Å:- Chain B: V.112, R.113, S.114, K.122, Y.123, S.124
- Chain H: S.114
Ligand excluded by PLIPEDO.25: 7 residues within 4Å:- Chain B: R.44, N.46
- Chain G: L.221, Y.222, E.225
- Chain H: Q.121
- Ligands: EDO.7
Ligand excluded by PLIPEDO.29: 6 residues within 4Å:- Chain A: K.217, F.258
- Chain B: S.118
- Chain C: K.287, N.288, D.289
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain C: P.212, F.213, M.214
- Chain E: V.159, R.373
Ligand excluded by PLIPEDO.31: 5 residues within 4Å:- Chain C: E.90, F.100, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.32: 8 residues within 4Å:- Chain C: I.9, Y.14, S.16, V.70, V.71, W.72
- Chain O: I.408, G.409
Ligand excluded by PLIPEDO.33: 3 residues within 4Å:- Chain C: R.141, F.365, Q.366
Ligand excluded by PLIPEDO.34: 6 residues within 4Å:- Chain C: R.196, G.197, Q.415, T.419
- Chain D: F.10
- Ligands: EDO.46
Ligand excluded by PLIPEDO.35: 8 residues within 4Å:- Chain C: V.144, D.368, A.370, S.371
- Chain D: R.89
- Chain I: T.36, I.107, D.108
Ligand excluded by PLIPEDO.36: 3 residues within 4Å:- Chain C: E.111, E.112
- Chain O: R.255
Ligand excluded by PLIPEDO.37: 5 residues within 4Å:- Chain A: R.215
- Chain C: Q.151, R.286
- Ligands: EDO.104, BCT.108
Ligand excluded by PLIPEDO.38: 7 residues within 4Å:- Chain A: E.218, L.221, Y.222
- Chain B: R.119
- Chain C: V.159, R.163
- Ligands: EDO.47
Ligand excluded by PLIPEDO.39: 7 residues within 4Å:- Chain C: R.141, I.142, P.143, V.144, Q.366, Q.367, D.368
Ligand excluded by PLIPEDO.42: 7 residues within 4Å:- Chain C: A.232, A.233
- Chain D: M.1, G.108, F.109
- Chain F: E.134
- Ligands: EDO.63
Ligand excluded by PLIPEDO.43: 8 residues within 4Å:- Chain D: E.115, R.119
- Chain E: I.231, V.237, K.238, G.263, V.265
- Chain F: R.44
Ligand excluded by PLIPEDO.44: 8 residues within 4Å:- Chain B: F.109, R.110, L.111
- Chain D: D.40, E.134, R.137
- Ligands: EDO.22, EDO.45
Ligand excluded by PLIPEDO.45: 8 residues within 4Å:- Chain A: R.229
- Chain D: T.38, E.39, N.45, F.47, E.49, E.134
- Ligands: EDO.44
Ligand excluded by PLIPEDO.46: 4 residues within 4Å:- Chain D: R.2, T.4, F.10
- Ligands: EDO.34
Ligand excluded by PLIPEDO.47: 8 residues within 4Å:- Chain A: L.221, Y.222, E.225
- Chain B: R.119, Q.121
- Chain D: R.44, N.46
- Ligands: EDO.38
Ligand excluded by PLIPEDO.51: 6 residues within 4Å:- Chain C: K.217, F.258
- Chain D: S.118
- Chain E: K.287, N.288, D.289
Ligand excluded by PLIPEDO.52: 5 residues within 4Å:- Chain E: P.212, F.213, M.214
- Chain G: V.159, R.373
Ligand excluded by PLIPEDO.53: 5 residues within 4Å:- Chain E: R.196, G.197, Q.415, T.419
- Chain F: F.10
Ligand excluded by PLIPEDO.54: 4 residues within 4Å:- Chain E: E.111, E.112
- Chain M: R.215, R.255
Ligand excluded by PLIPEDO.55: 4 residues within 4Å:- Chain E: E.90, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.56: 7 residues within 4Å:- Chain C: E.218, L.221, Y.222
- Chain D: R.119
- Chain E: V.159, R.163
- Ligands: EDO.65
Ligand excluded by PLIPEDO.57: 4 residues within 4Å:- Chain E: L.351, L.352, K.374, D.398
Ligand excluded by PLIPEDO.61: 7 residues within 4Å:- Chain E: A.232, A.233
- Chain F: M.1, G.108, F.109
- Chain H: E.134
- Ligands: EDO.84
Ligand excluded by PLIPEDO.62: 7 residues within 4Å:- Chain F: E.115, R.119
- Chain G: I.231, V.237, K.238, G.263
- Chain H: R.44
Ligand excluded by PLIPEDO.63: 8 residues within 4Å:- Chain D: F.109, R.110, L.111
- Chain F: D.40, E.134, R.137
- Ligands: EDO.42, EDO.64
Ligand excluded by PLIPEDO.64: 7 residues within 4Å:- Chain C: R.229
- Chain F: T.38, E.39, N.45, E.49, E.134
- Ligands: EDO.63
Ligand excluded by PLIPEDO.65: 8 residues within 4Å:- Chain C: L.221, Y.222, E.225
- Chain D: R.119, Q.121
- Chain F: R.44, N.46
- Ligands: EDO.56
Ligand excluded by PLIPEDO.66: 3 residues within 4Å:- Chain F: D.16, G.69, R.72
Ligand excluded by PLIPEDO.67: 8 residues within 4Å:- Chain D: S.114
- Chain F: V.112, R.113, S.114, K.122, Y.123, S.124
- Ligands: EDO.90
Ligand excluded by PLIPEDO.71: 6 residues within 4Å:- Chain E: K.217, F.258
- Chain F: S.118
- Chain G: K.287, N.288, D.289
Ligand excluded by PLIPEDO.72: 6 residues within 4Å:- Chain E: E.218, L.221, Y.222
- Chain G: V.159, R.163
- Ligands: EDO.89
Ligand excluded by PLIPEDO.73: 6 residues within 4Å:- Chain G: R.196, G.197, Q.415, T.419
- Chain H: F.10
- Ligands: EDO.87
Ligand excluded by PLIPEDO.74: 8 residues within 4Å:- Chain G: V.144, D.368, A.370, S.371
- Chain H: R.89
- Chain M: T.36, I.107, D.108
Ligand excluded by PLIPEDO.75: 6 residues within 4Å:- Chain G: N.348, L.352, L.355, E.356, N.358, Q.361
Ligand excluded by PLIPEDO.76: 6 residues within 4Å:- Chain G: E.90, F.100, Y.102, L.359, F.364, F.478
Ligand excluded by PLIPEDO.77: 8 residues within 4Å:- Chain G: I.9, Y.14, S.16, V.70, V.71, W.72
- Chain K: I.408, G.409
Ligand excluded by PLIPEDO.78: 3 residues within 4Å:- Chain G: Y.31, A.32, V.33
Ligand excluded by PLIPEDO.79: 5 residues within 4Å:- Chain G: E.257, K.260, W.284, K.287, N.288
Ligand excluded by PLIPEDO.83: 7 residues within 4Å:- Chain B: E.134
- Chain G: A.232, A.233
- Chain H: M.1, G.108, F.109
- Ligands: EDO.20
Ligand excluded by PLIPEDO.84: 8 residues within 4Å:- Chain F: F.109, R.110, L.111
- Chain H: D.40, E.134, R.137
- Ligands: EDO.61, EDO.85
Ligand excluded by PLIPEDO.85: 8 residues within 4Å:- Chain E: R.229
- Chain H: T.38, E.39, N.45, F.47, E.49, E.134
- Ligands: EDO.84
Ligand excluded by PLIPEDO.86: 7 residues within 4Å:- Chain A: I.231, V.237, K.238, G.263
- Chain B: R.44
- Chain H: E.115, R.119
Ligand excluded by PLIPEDO.87: 4 residues within 4Å:- Chain H: R.2, T.4, F.10
- Ligands: EDO.73
Ligand excluded by PLIPEDO.88: 7 residues within 4Å:- Chain E: K.185, R.189
- Chain G: F.167
- Chain H: E.36, K.81, N.83, C.94
Ligand excluded by PLIPEDO.89: 7 residues within 4Å:- Chain E: L.221, Y.222, E.225
- Chain F: Q.121
- Chain H: R.44, N.46
- Ligands: EDO.72
Ligand excluded by PLIPEDO.90: 8 residues within 4Å:- Chain F: S.114
- Chain H: V.112, R.113, S.114, K.122, Y.123, S.124
- Ligands: EDO.67
Ligand excluded by PLIPEDO.93: 5 residues within 4Å:- Chain I: N.288, D.289
- Chain O: K.217, F.258
- Chain P: S.118
Ligand excluded by PLIPEDO.94: 5 residues within 4Å:- Chain I: V.159, R.373
- Chain O: P.212, F.213, M.214
Ligand excluded by PLIPEDO.95: 5 residues within 4Å:- Chain I: P.212, F.213, M.214
- Chain K: V.159, R.373
Ligand excluded by PLIPEDO.96: 4 residues within 4Å:- Chain I: E.90, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.97: 7 residues within 4Å:- Chain I: V.159, R.163
- Chain O: E.218, L.221, Y.222
- Chain P: R.119
- Ligands: EDO.115
Ligand excluded by PLIPEDO.98: 4 residues within 4Å:- Chain I: R.196, G.197, Q.415, T.419
Ligand excluded by PLIPEDO.99: 8 residues within 4Å:- Chain C: T.36, I.107, D.108
- Chain I: V.144, D.368, A.370, S.371
- Chain J: R.89
Ligand excluded by PLIPEDO.100: 8 residues within 4Å:- Chain A: I.408, G.409
- Chain I: I.9, Y.14, S.16, V.70, V.71, W.72
Ligand excluded by PLIPEDO.101: 3 residues within 4Å:- Chain I: R.141, F.365, Q.366
Ligand excluded by PLIPEDO.102: 5 residues within 4Å:- Chain A: A.247, E.251
- Chain I: G.113, Q.279, I.283
Ligand excluded by PLIPEDO.103: 8 residues within 4Å:- Chain C: E.112
- Chain I: K.148, Q.151, A.370, S.371, L.372
- Chain O: P.212, R.215
Ligand excluded by PLIPEDO.104: 7 residues within 4Å:- Chain A: R.215
- Chain C: L.147, K.148, F.150, L.372
- Chain I: E.112
- Ligands: EDO.37
Ligand excluded by PLIPEDO.105: 2 residues within 4Å:- Chain I: P.443, R.447
Ligand excluded by PLIPEDO.110: 8 residues within 4Å:- Chain J: D.40, E.134, R.137
- Chain P: F.109, R.110, L.111
- Ligands: EDO.113, EDO.173
Ligand excluded by PLIPEDO.111: 6 residues within 4Å:- Chain J: E.115, R.119
- Chain K: I.231, K.238, G.263
- Chain L: R.44
Ligand excluded by PLIPEDO.112: 7 residues within 4Å:- Chain I: A.232, A.233
- Chain J: M.1, G.108, F.109
- Chain L: E.134
- Ligands: EDO.134
Ligand excluded by PLIPEDO.113: 8 residues within 4Å:- Chain J: T.38, E.39, N.45, F.47, E.49, E.134
- Chain O: R.229
- Ligands: EDO.110
Ligand excluded by PLIPEDO.114: 7 residues within 4Å:- Chain J: V.112, R.113, S.114, K.122, Y.123, S.124
- Chain P: S.114
Ligand excluded by PLIPEDO.115: 7 residues within 4Å:- Chain J: R.44, N.46
- Chain O: L.221, Y.222, E.225
- Chain P: Q.121
- Ligands: EDO.97
Ligand excluded by PLIPEDO.119: 6 residues within 4Å:- Chain I: K.217, F.258
- Chain J: S.118
- Chain K: K.287, N.288, D.289
Ligand excluded by PLIPEDO.120: 5 residues within 4Å:- Chain K: P.212, F.213, M.214
- Chain M: V.159, R.373
Ligand excluded by PLIPEDO.121: 5 residues within 4Å:- Chain K: E.90, F.100, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.122: 8 residues within 4Å:- Chain G: I.408, G.409
- Chain K: I.9, Y.14, S.16, V.70, V.71, W.72
Ligand excluded by PLIPEDO.123: 3 residues within 4Å:- Chain K: R.141, F.365, Q.366
Ligand excluded by PLIPEDO.124: 6 residues within 4Å:- Chain K: R.196, G.197, Q.415, T.419
- Chain L: F.10
- Ligands: EDO.136
Ligand excluded by PLIPEDO.125: 8 residues within 4Å:- Chain A: T.36, I.107, D.108
- Chain K: V.144, D.368, A.370, S.371
- Chain L: R.89
Ligand excluded by PLIPEDO.126: 3 residues within 4Å:- Chain G: R.255
- Chain K: E.111, E.112
Ligand excluded by PLIPEDO.127: 5 residues within 4Å:- Chain I: R.215
- Chain K: Q.151, R.286
- Ligands: EDO.14, BCT.18
Ligand excluded by PLIPEDO.128: 7 residues within 4Å:- Chain I: E.218, L.221, Y.222
- Chain J: R.119
- Chain K: V.159, R.163
- Ligands: EDO.137
Ligand excluded by PLIPEDO.129: 7 residues within 4Å:- Chain K: R.141, I.142, P.143, V.144, Q.366, Q.367, D.368
Ligand excluded by PLIPEDO.132: 7 residues within 4Å:- Chain K: A.232, A.233
- Chain L: M.1, G.108, F.109
- Chain N: E.134
- Ligands: EDO.153
Ligand excluded by PLIPEDO.133: 8 residues within 4Å:- Chain L: E.115, R.119
- Chain M: I.231, V.237, K.238, G.263, V.265
- Chain N: R.44
Ligand excluded by PLIPEDO.134: 8 residues within 4Å:- Chain J: F.109, R.110, L.111
- Chain L: D.40, E.134, R.137
- Ligands: EDO.112, EDO.135
Ligand excluded by PLIPEDO.135: 8 residues within 4Å:- Chain I: R.229
- Chain L: T.38, E.39, N.45, F.47, E.49, E.134
- Ligands: EDO.134
Ligand excluded by PLIPEDO.136: 4 residues within 4Å:- Chain L: R.2, T.4, F.10
- Ligands: EDO.124
Ligand excluded by PLIPEDO.137: 8 residues within 4Å:- Chain I: L.221, Y.222, E.225
- Chain J: R.119, Q.121
- Chain L: R.44, N.46
- Ligands: EDO.128
Ligand excluded by PLIPEDO.141: 6 residues within 4Å:- Chain K: K.217, F.258
- Chain L: S.118
- Chain M: K.287, N.288, D.289
Ligand excluded by PLIPEDO.142: 5 residues within 4Å:- Chain M: P.212, F.213, M.214
- Chain O: V.159, R.373
Ligand excluded by PLIPEDO.143: 5 residues within 4Å:- Chain M: R.196, G.197, Q.415, T.419
- Chain N: F.10
Ligand excluded by PLIPEDO.144: 4 residues within 4Å:- Chain E: R.215, R.255
- Chain M: E.111, E.112
Ligand excluded by PLIPEDO.145: 4 residues within 4Å:- Chain M: E.90, Y.102, L.359, F.478
Ligand excluded by PLIPEDO.146: 7 residues within 4Å:- Chain K: E.218, L.221, Y.222
- Chain L: R.119
- Chain M: V.159, R.163
- Ligands: EDO.155
Ligand excluded by PLIPEDO.147: 4 residues within 4Å:- Chain M: L.351, L.352, K.374, D.398
Ligand excluded by PLIPEDO.151: 7 residues within 4Å:- Chain M: A.232, A.233
- Chain N: M.1, G.108, F.109
- Chain P: E.134
- Ligands: EDO.174
Ligand excluded by PLIPEDO.152: 7 residues within 4Å:- Chain N: E.115, R.119
- Chain O: I.231, V.237, K.238, G.263
- Chain P: R.44
Ligand excluded by PLIPEDO.153: 8 residues within 4Å:- Chain L: F.109, R.110, L.111
- Chain N: D.40, E.134, R.137
- Ligands: EDO.132, EDO.154
Ligand excluded by PLIPEDO.154: 7 residues within 4Å:- Chain K: R.229
- Chain N: T.38, E.39, N.45, E.49, E.134
- Ligands: EDO.153
Ligand excluded by PLIPEDO.155: 8 residues within 4Å:- Chain K: L.221, Y.222, E.225
- Chain L: R.119, Q.121
- Chain N: R.44, N.46
- Ligands: EDO.146
Ligand excluded by PLIPEDO.156: 3 residues within 4Å:- Chain N: D.16, G.69, R.72
Ligand excluded by PLIPEDO.157: 8 residues within 4Å:- Chain L: S.114
- Chain N: V.112, R.113, S.114, K.122, Y.123, S.124
- Ligands: EDO.180
Ligand excluded by PLIPEDO.161: 6 residues within 4Å:- Chain M: K.217, F.258
- Chain N: S.118
- Chain O: K.287, N.288, D.289
Ligand excluded by PLIPEDO.162: 6 residues within 4Å:- Chain M: E.218, L.221, Y.222
- Chain O: V.159, R.163
- Ligands: EDO.179
Ligand excluded by PLIPEDO.163: 6 residues within 4Å:- Chain O: R.196, G.197, Q.415, T.419
- Chain P: F.10
- Ligands: EDO.177
Ligand excluded by PLIPEDO.164: 8 residues within 4Å:- Chain E: T.36, I.107, D.108
- Chain O: V.144, D.368, A.370, S.371
- Chain P: R.89
Ligand excluded by PLIPEDO.165: 6 residues within 4Å:- Chain O: N.348, L.352, L.355, E.356, N.358, Q.361
Ligand excluded by PLIPEDO.166: 6 residues within 4Å:- Chain O: E.90, F.100, Y.102, L.359, F.364, F.478
Ligand excluded by PLIPEDO.167: 8 residues within 4Å:- Chain C: I.408, G.409
- Chain O: I.9, Y.14, S.16, V.70, V.71, W.72
Ligand excluded by PLIPEDO.168: 3 residues within 4Å:- Chain O: Y.31, A.32, V.33
Ligand excluded by PLIPEDO.169: 5 residues within 4Å:- Chain O: E.257, K.260, W.284, K.287, N.288
Ligand excluded by PLIPEDO.173: 7 residues within 4Å:- Chain J: E.134
- Chain O: A.232, A.233
- Chain P: M.1, G.108, F.109
- Ligands: EDO.110
Ligand excluded by PLIPEDO.174: 8 residues within 4Å:- Chain N: F.109, R.110, L.111
- Chain P: D.40, E.134, R.137
- Ligands: EDO.151, EDO.175
Ligand excluded by PLIPEDO.175: 8 residues within 4Å:- Chain M: R.229
- Chain P: T.38, E.39, N.45, F.47, E.49, E.134
- Ligands: EDO.174
Ligand excluded by PLIPEDO.176: 7 residues within 4Å:- Chain I: I.231, V.237, K.238, G.263
- Chain J: R.44
- Chain P: E.115, R.119
Ligand excluded by PLIPEDO.177: 4 residues within 4Å:- Chain P: R.2, T.4, F.10
- Ligands: EDO.163
Ligand excluded by PLIPEDO.178: 7 residues within 4Å:- Chain M: K.185, R.189
- Chain O: F.167
- Chain P: E.36, K.81, N.83, C.94
Ligand excluded by PLIPEDO.179: 7 residues within 4Å:- Chain M: L.221, Y.222, E.225
- Chain N: Q.121
- Chain P: R.44, N.46
- Ligands: EDO.162
Ligand excluded by PLIPEDO.180: 8 residues within 4Å:- Chain N: S.114
- Chain P: V.112, R.113, S.114, K.122, Y.123, S.124
- Ligands: EDO.157
Ligand excluded by PLIP- 30 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.16: 3 residues within 4Å:- Chain A: R.344, N.348, Q.361
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.361
BCT.17: 5 residues within 4Å:- Chain A: T.467, F.468, N.469, Y.470
- Ligands: BCT.19
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.467, A:Y.470
BCT.18: 6 residues within 4Å:- Chain A: E.111, E.112
- Chain I: R.215, E.251, R.255
- Ligands: EDO.127
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain I- Hydrogen bonds: A:E.111, I:E.251, I:R.255
- Water bridges: I:R.215, I:E.251
BCT.19: 5 residues within 4Å:- Chain A: I.466, T.467, F.468
- Chain I: V.18
- Ligands: BCT.17
No protein-ligand interaction detected (PLIP)BCT.26: 2 residues within 4Å:- Chain B: M.1, R.2
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:M.1
BCT.40: 4 residues within 4Å:- Chain C: T.467, F.468, N.469, Y.470
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.469, C:N.469
BCT.41: 2 residues within 4Å:- Chain C: P.443, R.447
1 PLIP interactions:1 interactions with chain C- Water bridges: C:A.440
BCT.48: 1 residues within 4Å:- Chain D: M.1
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:M.1, D:M.1
BCT.58: 4 residues within 4Å:- Chain E: T.467, F.468, N.469, Y.470
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.467, E:N.469, E:N.469
BCT.59: 3 residues within 4Å:- Chain E: L.39, F.365, Q.366
1 PLIP interactions:1 interactions with chain E- Water bridges: E:R.141
BCT.60: 2 residues within 4Å:- Chain E: P.443, R.447
No protein-ligand interaction detected (PLIP)BCT.68: 6 residues within 4Å:- Chain F: R.72, Q.73, Q.74, H.75, S.76, N.77
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:S.76, F:S.76
BCT.80: 3 residues within 4Å:- Chain G: R.344, N.348, Q.361
2 PLIP interactions:2 interactions with chain G- Water bridges: G:N.348, G:N.348
BCT.81: 2 residues within 4Å:- Chain G: P.443, R.447
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:R.447, G:R.447
- Water bridges: G:Q.444
BCT.82: 2 residues within 4Å:- Chain G: V.333, Y.394
2 PLIP interactions:2 interactions with chain G- Water bridges: G:V.332, G:Y.394
BCT.106: 3 residues within 4Å:- Chain I: R.344, N.348, Q.361
1 PLIP interactions:1 interactions with chain I- Hydrogen bonds: I:Q.361
BCT.107: 5 residues within 4Å:- Chain I: T.467, F.468, N.469, Y.470
- Ligands: BCT.109
3 PLIP interactions:3 interactions with chain I- Hydrogen bonds: I:T.467, I:Y.470, I:Y.470
BCT.108: 6 residues within 4Å:- Chain A: R.215, E.251, R.255
- Chain I: E.111, E.112
- Ligands: EDO.37
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.251, A:R.255
- Water bridges: A:R.215
BCT.109: 5 residues within 4Å:- Chain A: V.18
- Chain I: I.466, T.467, F.468
- Ligands: BCT.107
No protein-ligand interaction detected (PLIP)BCT.116: 2 residues within 4Å:- Chain J: M.1, R.2
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:M.1, J:M.1
BCT.130: 4 residues within 4Å:- Chain K: T.467, F.468, N.469, Y.470
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:N.469, K:N.469
BCT.131: 2 residues within 4Å:- Chain K: P.443, R.447
1 PLIP interactions:1 interactions with chain K- Water bridges: K:A.440
BCT.138: 1 residues within 4Å:- Chain L: M.1
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:M.1
BCT.148: 4 residues within 4Å:- Chain M: T.467, F.468, N.469, Y.470
4 PLIP interactions:4 interactions with chain M- Hydrogen bonds: M:T.467, M:T.467, M:N.469, M:N.469
BCT.149: 3 residues within 4Å:- Chain M: L.39, F.365, Q.366
1 PLIP interactions:1 interactions with chain M- Water bridges: M:R.141
BCT.150: 2 residues within 4Å:- Chain M: P.443, R.447
No protein-ligand interaction detected (PLIP)BCT.158: 6 residues within 4Å:- Chain N: R.72, Q.73, Q.74, H.75, S.76, N.77
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:S.76, N:S.76
BCT.170: 3 residues within 4Å:- Chain O: R.344, N.348, Q.361
2 PLIP interactions:2 interactions with chain O- Water bridges: O:N.348, O:N.348
BCT.171: 2 residues within 4Å:- Chain O: P.443, R.447
3 PLIP interactions:3 interactions with chain O- Hydrogen bonds: O:R.447, O:R.447
- Water bridges: O:Q.444
BCT.172: 2 residues within 4Å:- Chain O: V.333, Y.394
2 PLIP interactions:2 interactions with chain O- Water bridges: O:V.332, O:Y.394
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, Y. et al., Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth. Nat.Plants (2023)
- Release Date
- 2023-06-14
- Peptides
- Ribulose bisphosphate carboxylase large chain: ACEGIKMO
Ribulose bisphosphate carboxylase small chain: BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
MG
OI
AK
CM
MO
OB
BD
DF
NH
PJ
BL
DN
NP
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 134 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 30 x BCT: BICARBONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, Y. et al., Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth. Nat.Plants (2023)
- Release Date
- 2023-06-14
- Peptides
- Ribulose bisphosphate carboxylase large chain: ACEGIKMO
Ribulose bisphosphate carboxylase small chain: BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
MG
OI
AK
CM
MO
OB
BD
DF
NH
PJ
BL
DN
NP
P