SMTL ID : 8bdy.1

Crystal structure of TRIM33 alpha PHD-Bromo domain in complex with 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

1 x QCU: 1,3-dimethylbenzimidazol-2-one(Non-covalent)

QCU.1: 7 residues within 4Å: Chain A: E.103, V.108, P.109, I.112, Y.115, F.160, V.184 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.112 Water bridges: A:Y.115

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: D.144 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.144

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.24, C.27, C.50, C.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.50, A:C.53 ZN.4: 4 residues within 4Å: Chain A: C.12, C.15, H.32, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:H.32, A:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palomba, T. et al., Exploiting ELIOT for Scaffold-Repurposing Opportunities: TRIM33 a Possible Novel E3 Ligase to Expand the Toolbox for PROTAC Design. Int J Mol Sci (2022)

Release Date

2022-12-07

Peptides

E3 ubiquitin-protein ligase TRIM33: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM33

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