SMTL ID : 8bf3.1

Crystal structure of feruloyl esterase wtsFae1B in complex with xylobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

homo-dimer

Ligands

1 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)

XYP-XYP.1: 11 residues within 4Å: Chain A: D.103, H.170, G.171, A.172, G.173, G.174, L.271, S.272, H.368, W.370, W.373 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.103, A:G.171, A:W.370 Water bridges: A:D.103, A:D.103, A:H.170, A:G.171

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 10 residues within 4Å: Chain A: K.134, W.136, R.147, E.218, V.219 Chain B: H.123, H.129, V.132, A.186, Q.187 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:W.136, A:R.147, B:H.123 Water bridges: A:K.134, A:E.218, B:V.132 EDO.3: 9 residues within 4Å: Chain A: Q.279, N.283, I.299, R.316, I.320, Y.331, L.348, T.351, L.352 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.279, A:N.283 Water bridges: A:N.283, A:R.316, A:R.316 EDO.4: 9 residues within 4Å: Chain A: T.131, T.133, T.152, Y.156, E.157, N.256, F.257 Chain B: T.133 Ligands: EDO.14 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.133, A:T.133, A:T.152 Water bridges: A:T.152, A:E.157, A:N.256, A:N.256 EDO.5: 5 residues within 4Å: Chain A: K.44, T.46, V.58, T.86, G.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.44, A:T.46 EDO.6: 7 residues within 4Å: Chain A: G.49, E.50, W.51, Q.52, T.53, G.54, P.55 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.54 EDO.7: 7 residues within 4Å: Chain A: K.91, A.92, L.93, Y.107 Chain B: L.93, D.94, A.95 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.93 Water bridges: A:Y.107, B:L.93 EDO.8: 8 residues within 4Å: Chain A: L.93, D.94, A.95, V.100 Chain B: K.91, A.92, L.93, Y.107 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.93, B:L.93 Water bridges: B:Y.107 EDO.9: 9 residues within 4Å: Chain A: V.132, K.134, Y.149, D.177, T.180 Chain B: K.134, R.147, E.218 Ligands: EDO.11 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.134, B:K.134, B:R.147, B:E.218 EDO.11: 12 residues within 4Å: Chain A: H.123, H.129, V.132, A.186, Q.187, D.190 Chain B: K.134, W.136, R.147, E.218, V.219 Ligands: EDO.9 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.123, B:W.136, B:R.147 EDO.12: 8 residues within 4Å: Chain B: Q.279, N.283, K.319, I.320, L.323, Y.331, L.348, L.352 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.279, B:N.283, B:Y.331 Water bridges: B:I.320 EDO.13: 11 residues within 4Å: Chain A: V.90, K.91 Chain B: I.22, R.36, V.37, Y.38, F.85, L.93, D.94, A.95, N.96 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.38, B:Y.38, B:D.94, B:A.95, B:N.96 Water bridges: B:N.96 EDO.14: 8 residues within 4Å: Chain A: T.133 Chain B: T.131, T.133, T.152, Y.156, E.157, F.257 Ligands: EDO.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.152, B:E.157 Water bridges: B:T.152, B:Y.156, B:N.256 EDO.15: 6 residues within 4Å: Chain B: E.50, E.79, L.80, Y.81, A.371, R.374 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.80, B:R.374 Water bridges: B:A.371, B:A.371 EDO.16: 6 residues within 4Å: Chain B: D.338, D.339, F.340, G.367, H.368, T.369 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.340, B:H.368 Water bridges: B:D.339, B:H.368

1 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.10: 10 residues within 4Å: Chain B: D.103, G.171, A.172, G.173, G.174, M.182, L.271, H.368, W.370, W.373 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.103, B:D.103, B:G.171, B:G.171, B:W.370 Water bridges: B:H.170, B:H.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkens, C., Crystal structure of feruloyl esterase wtsFae1B in complex with xylobiose. To Be Published

Release Date

2022-11-30

Peptides

Ferulic acid esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferulic acid esterase

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