SMTL ID : 8bfr.1

The E. coli TrpD2 protein YbiB at 1.3 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.97, P.98, P.99, A.100, Q.168, D.172 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.97, A:P.98, A:A.100, A:Q.168, A:D.172 Water bridges: A:A.100 GOL.2: 4 residues within 4Å: Chain A: K.130, L.305, A.306, F.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.305 GOL.3: 6 residues within 4Å: Chain B: T.97, P.98, P.99, A.100, Q.168, D.172 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.97, B:P.98, B:A.100, B:Q.168, B:D.172 Water bridges: B:A.100 GOL.4: 4 residues within 4Å: Chain B: K.130, L.305, A.306, F.343 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deckers, B. et al., YbiB: a novel interactor of the GTPase ObgE. Nucleic Acids Res. (2023)

Release Date

2023-02-22

Peptides

Protein YbiB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein YbiB

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