SMTL ID : 8bfs.1

Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ326

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.90, P.91, N.92, H.93 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.90, A:N.92, A:N.92, A:H.93 Water bridges: A:D.18, A:S.90 Salt bridges: A:H.93 SO4.8: 8 residues within 4Å: Chain A: Y.133, H.136, R.137, K.200, C.204, T.269, C.270, E.271 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:C.270, A:E.271 Water bridges: A:K.200, A:K.200, A:E.271 Salt bridges: A:H.136, A:R.137, A:K.200 SO4.9: 4 residues within 4Å: Chain A: G.61, K.62, E.63, S.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.59, A:G.61, A:K.62, A:E.63, A:S.64 SO4.10: 3 residues within 4Å: Chain A: Y.244, Q.296, K.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.244, A:Q.296 Salt bridges: A:K.299 SO4.11: 2 residues within 4Å: Chain A: K.287 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.288, A:N.288 Salt bridges: A:K.287

1 x QNR: 3~{H}-pyrrolo[2,3-c]isoquinolin-5-amine(Non-covalent)

QNR.2: 10 residues within 4Å: Chain A: L.29, V.37, A.50, V.82, M.98, Q.99, L.100, V.101, L.151, S.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.29, A:L.29, A:V.37, A:A.50, A:L.151 Hydrogen bonds: A:Q.99, A:V.101, A:V.101

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: L.73, I.76, V.82, A.83, L.84, Y.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.82, A:L.84, A:Y.134, A:Y.134 EDO.4: 3 residues within 4Å: Chain A: P.219, Y.222, N.300 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: L.129, D.130, Y.133, E.271, A.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.130, A:D.130 EDO.6: 5 residues within 4Å: Chain A: F.115, N.286, K.287, N.288 Ligands: SO4.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.288 Water bridges: A:K.287 EDO.7: 3 residues within 4Å: Chain A: D.247, I.248, L.285 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kraemer, A. et al., Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ326. To Be Published

Release Date

2022-11-16

Peptides

Calcium/calmodulin-dependent protein kinase type 1D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent protein kinase type 1D

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