SMTL ID : 8bft.1

The E. coli TrpD2 protein YbiB in complex with a C-terminal peptide from ObgE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

hetero-2-2-mer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: P.103, L.131, G.132, F.133, L.323, E.328, R.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.338, A:R.338 PEG.2: 7 residues within 4Å: Chain A: M.24, D.46, T.47, R.49, G.50, L.51, A.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:R.49 Water bridges: A:G.50 PEG.3: 7 residues within 4Å: Chain C: P.103, L.131, G.132, F.133, L.323, E.328, R.338 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.338, C:R.338 PEG.4: 7 residues within 4Å: Chain C: M.24, D.46, T.47, R.49, G.50, L.51, A.53 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.49, C:R.49 Water bridges: C:G.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deckers, B. et al., YbiB: a novel interactor of the GTPase ObgE. Nucleic Acids Res. (2023)

Release Date

2023-02-22

Peptides

Protein YbiB: AC
GTPase ObgE/CgtA: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Protein YbiB

GTPase ObgE/CgtA

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