SMTL ID : 8bj0.1

Crystal structure of Scribble PDZ1 with PTHR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x GLN- GLU- GLU- TRP- GLU- THR- VAL- MET: Parathyroid hormone/parathyroid hormone-related peptide receptor(Non-covalent)

GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1: 32 residues within 4Å: Chain A: P.17, L.18, G.19, L.20, S.21, I.22, V.23, G.24, H.28, S.30, H.31, V.35, S.43, K.44, H.75, Q.76, V.79, L.82, L.83 Chain B: H.31, K.44, V.79, L.83 Ligands: CL.2, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.23, A:H.28, A:H.31, B:L.83 Hydrogen bonds: A:L.18, A:G.19, A:L.20, A:L.20, A:L.20, A:S.21, A:I.22, A:I.22, A:H.28, A:S.43, A:Q.76 Salt bridges: A:H.28, A:K.44 pi-Stacking: A:H.28 GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3: 32 residues within 4Å: Chain A: H.31, K.44, V.79, L.83 Chain B: P.17, L.18, G.19, L.20, S.21, I.22, V.23, G.24, H.28, S.30, H.31, V.35, S.43, K.44, H.75, Q.76, V.79, L.82, L.83 Ligands: GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1, CL.4 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.23, B:H.28, B:H.31, A:L.83 Hydrogen bonds: B:L.18, B:G.19, B:L.20, B:L.20, B:S.21, B:S.21, B:I.22, B:I.22, B:H.28, B:S.43, B:Q.76 Salt bridges: B:H.28, B:K.44 pi-Stacking: B:H.28

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: S.21, K.44 Chain B: H.31 Ligands: GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.1 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: H.31 Chain B: S.21, K.44 Ligands: GLN-GLU-GLU-TRP-GLU-THR-VAL-MET.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, B.Z. et al., Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide. To Be Published

Release Date

2023-11-15

Peptides

Protein scribble homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein scribble homolog

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