SMTL ID : 8bja.1

Structure of the human UBR5 Dimer.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1179, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1179, A:C.1208, A:C.1211, A:C.1232 ZN.2: 5 residues within 4Å: Chain A: C.1211, C.1215, C.1234, C.1240, T.1242 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1211, A:C.1215, A:C.1234, A:C.1240 ZN.3: 4 residues within 4Å: Chain A: C.1196, C.1199, H.1216, H.1219 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1196, A:C.1199, A:H.1216, A:H.1219 ZN.4: 5 residues within 4Å: Chain B: C.1179, S.1180, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1179, B:C.1208, B:C.1211, B:C.1232 ZN.5: 5 residues within 4Å: Chain B: C.1211, C.1215, C.1234, C.1240, T.1242 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.1211, B:C.1215, B:C.1234, B:C.1240, B:T.1242 ZN.6: 4 residues within 4Å: Chain B: C.1196, C.1199, H.1216, H.1219 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1196, B:C.1199, B:H.1216, B:H.1219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodakova, Z. et al., Cryo-EM structure of the chain-elongating E3 ubiquitin ligase UBR5. Embo J. (2023)

Release Date

2023-07-12

Peptides

E3 ubiquitin-protein ligase UBR5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

E3 ubiquitin-protein ligase UBR5