SMTL ID : 8bjc.1

Full length structure of the apo-state LpMIP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: D.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.4, A:D.4

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 10 residues within 4Å: Chain A: K.117, V.149, S.150, V.152, I.153, P.154, T.157, E.158, Q.161 Ligands: ZN.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.157, A:Q.161 Salt bridges: A:K.117 EPE.4: 11 residues within 4Å: Chain A: Y.125, G.127, F.135, D.136, F.147, Q.151, V.152, I.153, W.156, Y.179, F.196 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.136, A:I.153, A:Y.179, A:Y.179 pi-Cation interactions: A:W.156, A:W.156

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 9 residues within 4Å: Chain A: K.79, G.82, E.83, L.86, G.101, P.174, S.175, G.176, T.193 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.83, A:E.83, A:S.175, A:S.175, A:T.193 Water bridges: A:G.176 Salt bridges: A:K.79, A:E.83

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 2 residues within 4Å: Chain A: E.158 Ligands: EPE.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.158, A:E.158, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedemann, C. et al., Legionella pneumophila macrophage infectivity potentiator protein appendage domains modulate protein dynamics and inhibitor binding. Int.J.Biol.Macromol. (2023)

Release Date

2023-09-06

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidyl-prolyl cis-trans isomerase