SMTL ID : 8bje.1

A structure of the truncated LpMIP with bound inhibitor JK236.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Y.53, D.64, S.65, T.66 Ligands: GOL.2 No protein-ligand interaction detected (PLIP) GOL.2: 5 residues within 4Å: Chain A: A.73, T.74, F.75 Ligands: GOL.1, WRL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.74

1 x WRL: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one(Non-covalent)

WRL.3: 12 residues within 4Å: Chain A: Y.53, F.63, D.64, F.75, V.80, I.81, W.84, Y.107, R.110, I.116, F.124 Ligands: GOL.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.53, A:D.64, A:F.75, A:F.75, A:V.80, A:I.81, A:W.84, A:W.84, A:Y.107 Hydrogen bonds: A:D.64, A:I.81, A:Y.107 pi-Cation interactions: A:W.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedemann, C. et al., Legionella pneumophila macrophage infectivity potentiator protein appendage domains modulate protein dynamics and inhibitor binding. Int.J.Biol.Macromol. (2023)

Release Date

2023-09-06

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase