SMTL ID : 8bk5.1

A structure of the truncated LpMIP with bound inhibitor JK095.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

1 x 9QN: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one(Non-covalent)

9QN.1: 10 residues within 4Å: Chain A: Y.54, F.64, D.65, F.76, V.81, I.82, W.85, Y.108, I.117, F.125 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.54, A:D.65, A:F.76, A:F.76, A:V.81, A:W.85, A:W.85, A:Y.108, A:I.117 Hydrogen bonds: A:Y.54, A:D.65, A:I.82, A:Y.108

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: E.6, N.7, K.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.10 NA.3: 5 residues within 4Å: Chain A: N.37, G.95, S.96, T.97, H.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.37, A:H.128 NA.4: 2 residues within 4Å: Chain A: K.69, G.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.69, A:G.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedemann, C. et al., Legionella pneumophila macrophage infectivity potentiator protein appendage domains modulate protein dynamics and inhibitor binding. Int.J.Biol.Macromol. (2023)

Release Date

2023-09-06

Peptides

Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase