SMTL ID : 8bll.7 (7 other biounits)

Structure of RutB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 12 residues within 4Å: Chain A: Y.29, Y.35, N.72, W.74, N.88, S.92, N.93, A.94, L.95, L.109, Y.136 Ligands: ACT.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.74, A:Y.136 Hydrogen bonds: A:Y.35, A:S.92, A:A.94 Water bridges: A:Y.29, A:N.93, A:N.93 ACT.2: 10 residues within 4Å: Chain A: Y.29, L.36, Y.136, I.161, A.162, V.165, S.166, A.191 Chain B: F.207 Ligands: ACT.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.29, A:A.162, A:V.165 Hydrogen bonds: A:Y.29, A:Y.29, A:A.162, A:S.166 Water bridges: A:S.166, A:S.166 Salt bridges: A:K.133 ACT.3: 10 residues within 4Å: Chain A: F.207 Chain B: Y.29, L.36, Y.136, I.161, A.162, V.165, S.166, A.191 Ligands: ACT.4 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.29, B:A.162, B:V.165 Hydrogen bonds: B:Y.29, B:A.162, B:A.162, B:S.166 Water bridges: B:S.166, B:S.166 Salt bridges: B:K.133 ACT.4: 12 residues within 4Å: Chain A: F.207 Chain B: Y.29, Y.35, W.74, N.88, S.92, N.93, A.94, L.95, L.109, Y.136 Ligands: ACT.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.35, B:Y.136 Hydrogen bonds: B:Y.35, B:N.93, B:A.94, B:Y.136 Water bridges: B:N.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Busch, M.R. et al., Structural and Functional Characterization of the Ureidoacrylate Amidohydrolase RutB from Escherichia coli . Biochemistry (2023)

Release Date

2023-01-25

Peptides

Ureidoacrylate amidohydrolase RutB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

Ureidoacrylate amidohydrolase RutB

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