SMTL ID : 8blo.1

Human Urea Transporter UT-A (N-Terminal Domain Model)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

9 x PLD: di-heneicosanoyl phosphatidyl choline(Non-covalent)

PLD.1: 15 residues within 4Å: Chain A: K.199, Y.203, W.205, F.208, P.209, F.212, Y.247, L.256, F.257, F.258 Chain C: W.274, L.332, S.333, L.377, Y.381 15 PLIP interactions: 5 interactions with chain C, 10 interactions with chain A Hydrophobic interactions: C:W.274, C:L.377, C:Y.381, C:Y.381, C:Y.381, A:F.208, A:P.209, A:Y.247, A:F.257, A:F.257, A:F.258, A:F.258 Hydrogen bonds: A:Y.203, A:Y.203 Salt bridges: A:K.199 PLD.2: 14 residues within 4Å: Chain A: T.166, A.169, L.170, F.212, M.215, S.216, V.219 Chain C: Q.367, L.370, L.371, I.374, F.378, Y.381, N.416 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:Q.367, C:L.370, C:L.371, C:I.374, C:I.374, C:F.378, C:Y.381, A:T.166, A:L.170, A:M.215, A:V.219 PLD.3: 7 residues within 4Å: Chain A: Q.284, P.299, W.300, G.303, L.306, F.310 Ligands: LMN.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.299, A:P.299, A:W.300, A:L.306, A:L.306, A:F.310 Hydrogen bonds: A:W.300 PLD.9: 15 residues within 4Å: Chain A: W.274, L.332, S.333, L.377, Y.381 Chain B: K.199, Y.203, W.205, F.208, P.209, F.212, Y.247, L.256, F.257, F.258 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.208, B:P.209, B:Y.247, B:F.257, B:F.257, B:F.258, B:F.258, A:W.274, A:L.377, A:Y.381 Hydrogen bonds: B:Y.203, B:Y.203 Salt bridges: B:K.199 PLD.10: 14 residues within 4Å: Chain A: Q.367, L.370, L.371, I.374, F.378, Y.381, N.416 Chain B: T.166, A.169, L.170, F.212, M.215, S.216, V.219 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:T.166, B:L.170, B:M.215, B:V.219, A:L.370, A:L.371, A:I.374, A:I.374, A:F.378, A:Y.381 PLD.11: 7 residues within 4Å: Chain B: Q.284, P.299, W.300, G.303, L.306, F.310 Ligands: LMN.16 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.299, B:P.299, B:W.300, B:L.306, B:L.306, B:F.310 Hydrogen bonds: B:W.300 PLD.17: 15 residues within 4Å: Chain B: W.274, L.332, S.333, L.377, Y.381 Chain C: K.199, Y.203, W.205, F.208, P.209, F.212, Y.247, L.256, F.257, F.258 15 PLIP interactions: 10 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:F.208, C:P.209, C:Y.247, C:F.257, C:F.257, C:F.258, C:F.258, B:W.274, B:L.377, B:Y.381, B:Y.381, B:Y.381 Hydrogen bonds: C:Y.203, C:Y.203 Salt bridges: C:K.199 PLD.18: 14 residues within 4Å: Chain B: Q.367, L.370, L.371, I.374, F.378, Y.381, N.416 Chain C: T.166, A.169, L.170, F.212, M.215, S.216, V.219 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:Q.367, B:L.370, B:L.371, B:I.374, B:I.374, B:F.378, B:Y.381, C:T.166, C:L.170, C:M.215, C:V.219 PLD.19: 7 residues within 4Å: Chain C: Q.284, P.299, W.300, G.303, L.306, F.310 Ligands: LMN.24 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:P.299, C:P.299, C:W.300, C:L.306, C:L.306, C:F.310 Hydrogen bonds: C:W.300

15 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)

LMN.4: 6 residues within 4Å: Chain A: L.146, P.150, I.154, D.201, Y.202, W.204 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.146, A:P.150, A:I.154, A:Y.202, A:W.204, A:W.204 LMN.5: 4 residues within 4Å: Chain A: W.204, W.205, L.207, F.208 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.204, A:W.204, A:W.204, A:L.207, A:F.208, A:F.208 LMN.6: 7 residues within 4Å: Chain A: L.114, F.118, W.121, V.161, L.165, L.168, R.174 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.118, A:F.118, A:V.161, A:L.165 LMN.7: 4 residues within 4Å: Chain A: P.314, L.315, L.318, A.321 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.314, A:L.318, A:L.318, A:A.321 LMN.8: 6 residues within 4Å: Chain A: P.280, L.281, L.283, Q.284, P.287 Ligands: PLD.3 No protein-ligand interaction detected (PLIP) LMN.12: 6 residues within 4Å: Chain B: L.146, P.150, I.154, D.201, Y.202, W.204 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.146, B:P.150, B:I.154, B:Y.202, B:W.204, B:W.204 LMN.13: 4 residues within 4Å: Chain B: W.204, W.205, L.207, F.208 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.204, B:W.204, B:W.204, B:L.207, B:F.208, B:F.208 LMN.14: 7 residues within 4Å: Chain B: L.114, F.118, W.121, V.161, L.165, L.168, R.174 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.118, B:F.118, B:V.161, B:L.165 LMN.15: 4 residues within 4Å: Chain B: P.314, L.315, L.318, A.321 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.314, B:L.318, B:L.318, B:A.321 LMN.16: 6 residues within 4Å: Chain B: P.280, L.281, L.283, Q.284, P.287 Ligands: PLD.11 No protein-ligand interaction detected (PLIP) LMN.20: 6 residues within 4Å: Chain C: L.146, P.150, I.154, D.201, Y.202, W.204 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.146, C:P.150, C:I.154, C:Y.202, C:W.204, C:W.204 LMN.21: 4 residues within 4Å: Chain C: W.204, W.205, L.207, F.208 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.204, C:W.204, C:W.204, C:L.207, C:F.208, C:F.208 LMN.22: 7 residues within 4Å: Chain C: L.114, F.118, W.121, V.161, L.165, L.168, R.174 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.118, C:F.118, C:V.161, C:L.165 LMN.23: 4 residues within 4Å: Chain C: P.314, L.315, L.318, A.321 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:P.314, C:L.318, C:L.318, C:A.321 LMN.24: 6 residues within 4Å: Chain C: P.280, L.281, L.283, Q.284, P.287 Ligands: PLD.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chi, G. et al., Structural characterization of human urea transporters UT-A and UT-B and their inhibition. Sci Adv (2023)

Release Date

2023-10-04

Peptides

Urea transporter 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Urea transporter 2