SMTL ID : 8bpg.1

FcMR binding at subunit Fcu3 of IgM pentamer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-4-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: N.335 Chain D: S.38 Ligands: NAG.3 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: S.38 Chain E: N.335 Ligands: NAG.4 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain C: N.335, S.337 Ligands: NAG-NAG.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.335, C:S.337, C:S.337 NAG.4: 3 residues within 4Å: Chain F: N.335, S.337 Ligands: NAG-NAG.2 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.335, F:S.337, F:S.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Q. et al., Structural basis for Fc receptor recognition of immunoglobulin M. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-04-12

Peptides

Fas apoptotic inhibitory molecule 3: AD
Immunoglobulin heavy constant mu: BCEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
D

C
C

E
E

F
F

Fas apoptotic inhibitory molecule 3

Immunoglobulin heavy constant mu

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