SMTL ID : 8bpn.1 (1 other biounit)

The structure of thiocyanate dehydrogenase mutant form with Phe 436 replaced by Gln from Thioalkalivibrio paradoxus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 3 residues within 4Å: Chain A: D.58, W.63 Chain B: A.450 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.58 PEG.4: 6 residues within 4Å: Chain A: A.450 Chain B: D.58, T.61, W.63, M.65, Y.92 No protein-ligand interaction detected (PLIP)

4 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: K.49, H.81, H.82, H.474 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:H.474, H2O.1 CU.3: 4 residues within 4Å: Chain A: H.152, D.260, H.327, Q.328 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.152, A:D.260, A:D.260, A:H.327 CU.5: 3 residues within 4Å: Chain B: H.152, D.260, H.327 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.152, B:D.260, B:H.327, H2O.6, H2O.8 CU.6: 4 residues within 4Å: Chain B: K.49, H.81, H.82, H.474 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.81, B:H.474, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varfolomeeva, L.A. et al., Probing the Role of a Conserved Phenylalanine in the Active Site of Thiocyanate Dehydrogenase. Crystals (2022)

Release Date

2023-01-18

Peptides

Twin-arginine translocation signal domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Twin-arginine translocation signal domain-containing protein

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