SMTL ID : 8bqe.1

In situ structure of the Caulobacter crescentus S-layer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x MRH- BMA- MRH- MRH- BMA- MRH: 4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose

MRH-BMA-MRH-MRH-BMA-MRH.1: 20 residues within 4Å: Chain A: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.65 Hydrogen bonds: A:S.74, A:G.77 MRH-BMA-MRH-MRH-BMA-MRH.2: 17 residues within 4Å: Chain A: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.163, A:A.203 Hydrogen bonds: A:Y.140 MRH-BMA-MRH-MRH-BMA-MRH.3: 20 residues within 4Å: Chain B: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.65 Hydrogen bonds: B:S.74, B:G.77 MRH-BMA-MRH-MRH-BMA-MRH.4: 17 residues within 4Å: Chain B: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.163, B:A.203 Hydrogen bonds: B:Y.140 MRH-BMA-MRH-MRH-BMA-MRH.5: 20 residues within 4Å: Chain D: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.65 Hydrogen bonds: D:S.74, D:G.77 MRH-BMA-MRH-MRH-BMA-MRH.6: 17 residues within 4Å: Chain D: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.163, D:A.203 Hydrogen bonds: D:Y.140 MRH-BMA-MRH-MRH-BMA-MRH.7: 20 residues within 4Å: Chain C: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.65 Hydrogen bonds: C:S.74, C:G.77 MRH-BMA-MRH-MRH-BMA-MRH.8: 17 residues within 4Å: Chain C: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.163, C:A.203 Hydrogen bonds: C:Y.140 MRH-BMA-MRH-MRH-BMA-MRH.9: 20 residues within 4Å: Chain E: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:Y.65 Hydrogen bonds: E:S.74, E:G.77 MRH-BMA-MRH-MRH-BMA-MRH.10: 17 residues within 4Å: Chain E: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.163, E:A.203 Hydrogen bonds: E:Y.140 MRH-BMA-MRH-MRH-BMA-MRH.11: 20 residues within 4Å: Chain F: Y.65, P.73, S.74, G.77, F.80, N.87, N.89, Y.95, F.99, N.107, I.110, N.111, A.116, G.117, A.118, F.175, N.179, T.180, P.181, A.234 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:Y.65 Hydrogen bonds: F:S.74, F:G.77 MRH-BMA-MRH-MRH-BMA-MRH.12: 17 residues within 4Å: Chain F: K.98, F.99, A.100, E.102, N.103, Y.140, V.154, A.159, F.162, L.163, R.165, N.168, Y.171, T.199, N.202, A.203, S.207 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:L.163, F:A.203 Hydrogen bonds: F:Y.140

18 x CA: CALCIUM ION(Non-covalent)

CA.13: 5 residues within 4Å: Chain A: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.84, A:N.87, A:D.90 CA.14: 3 residues within 4Å: Chain A: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.17, A:D.83, A:D.83 CA.15: 3 residues within 4Å: Chain A: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.222, A:D.222, A:D.225, A:D.225 CA.16: 5 residues within 4Å: Chain B: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:S.84, B:N.87, B:D.90 CA.17: 3 residues within 4Å: Chain B: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.17, B:D.83, B:D.83 CA.18: 3 residues within 4Å: Chain B: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.222, B:D.222, B:D.225, B:D.225 CA.19: 5 residues within 4Å: Chain C: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:S.84, C:N.87, C:D.90 CA.20: 3 residues within 4Å: Chain C: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:L.17, C:D.83, C:D.83 CA.21: 3 residues within 4Å: Chain C: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.222, C:D.222, C:D.225, C:D.225 CA.22: 5 residues within 4Å: Chain D: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:S.84, D:N.87, D:D.90 CA.23: 3 residues within 4Å: Chain D: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:L.17, D:D.83, D:D.83 CA.24: 3 residues within 4Å: Chain D: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.222, D:D.222, D:D.225, D:D.225 CA.25: 5 residues within 4Å: Chain E: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:S.84, E:N.87, E:D.90 CA.26: 3 residues within 4Å: Chain E: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:L.17, E:D.83, E:D.83 CA.27: 3 residues within 4Å: Chain E: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.222, E:D.222, E:D.225, E:D.225 CA.28: 5 residues within 4Å: Chain F: S.84, N.87, T.88, D.90, D.93 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:S.84, F:N.87, F:D.90 CA.29: 3 residues within 4Å: Chain F: L.17, D.79, D.83 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:L.17, F:D.83, F:D.83 CA.30: 3 residues within 4Å: Chain F: D.222, D.225, A.227 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.222, F:D.222, F:D.225, F:D.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zivanov, J. et al., A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0. Elife (2022)

Release Date

2022-12-28

Peptides

S-layer protein rsaA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
E

E
F

F
A

S-layer protein rsaA

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