SMTL ID : 8bqf.6 (5 other biounits)

Adenylate Kinase L107I MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 34 residues within 4Å: Chain A: A.28, P.29, G.30, A.31, G.32, K.33, G.34, T.35, T.51, G.52, L.55, R.56, M.73, K.77, L.78, V.79, V.84, G.105, F.106, R.108, Q.112, R.139, R.143, V.152, Y.153, H.154, F.157, N.158, R.176, D.178, R.187, G.218, K.220, V.222 34 PLIP interactions: 34 interactions with chain A Hydrogen bonds: A:G.30, A:A.31, A:G.32, A:K.33, A:G.34, A:T.35, A:T.35, A:T.51, A:G.52, A:K.77, A:V.79, A:Q.112, A:Q.112, A:R.139, A:R.139, A:Y.153, A:K.220 Water bridges: A:R.139, A:R.139, A:N.158 Salt bridges: A:K.33, A:K.33, A:R.56, A:R.56, A:R.108, A:R.143, A:R.143, A:R.143, A:R.176, A:R.176, A:R.187, A:R.187 pi-Cation interactions: A:R.108, A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheerer, D. et al., Allosteric communication between ligand binding domains modulates substrate inhibition in adenylate kinase. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-05-10

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Adenylate kinase

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