- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.3: 12 residues within 4Å:- Chain A: C.50, Y.52, C.53, V.55, G.56, C.57, L.87, C.88, K.90, G.91, P.234, I.235
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.50, A:C.53, A:C.57, A:C.88
SF4.16: 12 residues within 4Å:- Chain B: C.12, T.13, A.14, C.15, R.16, C.18, P.71, C.157, P.158, T.159, T.161, M.162
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.12, B:C.15, B:C.18, B:C.157
SF4.17: 14 residues within 4Å:- Chain B: C.74, R.75, H.76, C.77, P.80, P.81, C.82, V.103, C.121, P.122, Y.123, I.125, P.126, K.137
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.74, B:C.77, B:C.82, B:C.121
SF4.18: 11 residues within 4Å:- Chain B: F.5, C.22, K.26, K.51, C.138, D.139, M.140, C.141, P.151, A.152, C.153
5 PLIP interactions:5 interactions with chain B,- Salt bridges: B:D.139
- Metal complexes: B:C.22, B:C.138, B:C.141, B:C.153
- 1 x W: TUNGSTEN ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 12 residues within 4Å:- Chain A: Y.300, R.775, V.778, D.779, K.780, W.799, P.810, G.811, T.812, K.813, H.814, P.815
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.775, A:G.782, A:G.811, A:T.812, A:K.813, A:K.813, A:H.814
GOL.7: 12 residues within 4Å:- Chain A: N.228, E.231, R.256, T.258, R.259, Y.883, R.884, V.885, E.911, R.946
- Chain B: H.39, W.67
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.228, A:R.256, A:R.256, A:R.259, A:R.259, A:R.884, A:E.911, A:R.946, A:R.946
GOL.8: 7 residues within 4Å:- Chain A: R.206, G.207, A.208, Y.462, W.765, M.818
- Ligands: PEG.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.207
- Water bridges: A:Q.447, A:Y.462
GOL.9: 9 residues within 4Å:- Chain A: N.214, A.217, N.218, W.239, K.246, R.754, I.755, G.756, F.758
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.214, A:K.246, A:K.246, A:A.753
GOL.10: 7 residues within 4Å:- Chain A: P.464, V.465, P.466, N.467, A.470, Y.476, A.479
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.467, A:N.467
- Water bridges: A:Y.476, A:R.495
GOL.11: 5 residues within 4Å:- Chain A: K.131, K.134, K.135, L.655, E.659
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.134
- Water bridges: A:K.131
GOL.19: 9 residues within 4Å:- Chain B: L.50, V.103, L.104, F.105, L.135, S.136, K.137, C.138, D.139
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.103, B:F.105, B:L.135, B:K.137
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.12: 5 residues within 4Å:- Chain A: R.70, A.71, E.99, Y.635
- Ligands: EDO.14
No protein-ligand interaction detected (PLIP)PEG.13: 10 residues within 4Å:- Chain A: R.206, W.491, F.714, W.728, L.729, P.766, R.769, I.817, M.818
- Ligands: GOL.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.206, A:W.491, A:R.769, A:R.769
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vilela-Alves, G. et al., Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci (2022)
- Release Date
- 2023-01-18
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x W: TUNGSTEN ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vilela-Alves, G. et al., Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci (2022)
- Release Date
- 2023-01-18
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B