SMTL ID : 8bs4.1

Crystal structure of YTHDF1 YTH domain dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: R.160, D.161, Q.163 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.160 Water bridges: A:E.164 Salt bridges: A:R.74

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Y.51 Chain B: K.49, S.50, Y.51, D.55, W.65, S.67, T.68, D.161 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.51, B:D.55, B:T.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Crystal structure of YTHDF1 YTH domain dimer. To Be Published

Release Date

2023-12-13

Peptides

YTH domain-containing family protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YTH domain-containing family protein 1