SMTL ID : 8bsg.1

COMPLEX OF LEPORINE SERUM ALBUMIN WITH DICLOFENAC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

2 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)

DIF.1: 15 residues within 4Å: Chain A: L.387, V.388, N.391, F.403, L.407, R.410, Y.411, L.430, V.433, G.434, V.449, E.450, L.453, R.485, S.489 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.387, A:V.388, A:F.403, A:L.407, A:V.433, A:V.449, A:L.453 Hydrogen bonds: A:R.410 Water bridges: A:Y.411 Halogen bonds: A:V.388, A:Y.411 DIF.2: 6 residues within 4Å: Chain A: N.402, N.405, A.406, V.409, N.541, K.545 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.405, A:N.541, A:K.545, A:K.545 Hydrogen bonds: A:N.541 Halogen bonds: A:N.541

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: R.199, Y.211, W.214, L.238 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.238 Hydrogen bonds: A:Y.211, A:Y.211 Water bridges: A:R.199, A:R.222 Salt bridges: A:R.199 ACT.4: 5 residues within 4Å: Chain A: Y.150, L.238, R.257, A.287, Y.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.150 Salt bridges: A:R.257 ACT.5: 2 residues within 4Å: Chain A: I.20, K.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.20 Hydrogen bonds: A:K.132 ACT.6: 4 residues within 4Å: Chain A: E.17, F.135, A.158, K.162 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.135 Hydrogen bonds: A:E.17 ACT.7: 1 residues within 4Å: Chain A: D.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.13 ACT.8: 3 residues within 4Å: Chain A: K.4, E.6, H.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.4, A:H.9 Salt bridges: A:K.4, A:H.9

2 x POG: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL(Non-covalent)

POG.9: 10 residues within 4Å: Chain A: R.209, K.212, A.213, D.324, L.327, G.328, L.331, G.350, E.354, V.482 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.212, A:L.327, A:L.331, A:V.482 Hydrogen bonds: A:R.209 POG.10: 8 residues within 4Å: Chain A: F.115, Y.138, V.142, R.145, H.146, K.186, A.189, L.190 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.142, A:A.189 Hydrogen bonds: A:K.186

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.11: 7 residues within 4Å: Chain A: E.187, L.190, I.191, A.194, S.429, K.432, Y.452 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.194 Hydrogen bonds: A:E.187, A:K.432 Water bridges: A:S.429 PGO.12: 4 residues within 4Å: Chain A: F.228, T.229, L.325, K.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.229, A:T.229 Water bridges: A:F.228

1 x NA: SODIUM ION(Non-functional Binders)

NA.13: 7 residues within 4Å: Chain A: Y.30, H.67, N.99, L.103, H.247, G.248, D.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.30, A:N.99, A:H.247, A:G.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talaj, J.A. et al., Structural Investigation of Diclofenac Binding to Ovine, Caprine, and Leporine Serum Albumins. Int J Mol Sci (2023)

Release Date

2023-02-08

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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