SMTL ID : 8btj.1

Murine cytomegalovirus protein M35

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

10 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.1: 12 residues within 4Å: Chain A: S.15, L.16, M.17, N.23, A.50, A.51, S.54, L.56, F.188, T.214, K.215 Ligands: MLI.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.16, A:M.17, A:K.215 Hydrogen bonds: A:S.15, A:M.17, A:N.23, A:A.50 BU3.3: 7 residues within 4Å: Chain A: A.48, A.51, L.52, L.56, M.58, L.66, Y.190 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.48, A:A.51, A:L.52 Hydrogen bonds: A:Y.190 Water bridges: A:Y.190 BU3.4: 6 residues within 4Å: Chain A: R.127, I.128, A.131, L.169, E.232, P.233 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.128 BU3.5: 9 residues within 4Å: Chain A: T.198, S.199, E.201, A.202, L.224, H.228, P.234, E.235, N.238 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.224, A:P.234 Hydrogen bonds: A:S.199, A:E.201, A:E.235 BU3.6: 10 residues within 4Å: Chain A: E.64, L.67, P.84, C.87, Y.88, S.91, L.264, T.267, L.271 Chain B: R.334 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.88 Hydrogen bonds: A:E.64 Water bridges: A:E.64, B:R.334 BU3.7: 5 residues within 4Å: Chain A: A.107, K.108, T.111, R.218, P.220 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.107 BU3.8: 8 residues within 4Å: Chain A: H.73 Chain B: A.48, A.51, L.52, L.56, M.58, L.66, Y.190 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.48, B:A.51, B:L.52, B:L.56 Hydrogen bonds: B:Y.190 BU3.9: 11 residues within 4Å: Chain B: L.16, M.17, I.18, N.23, A.50, A.51, S.54, L.56, F.188, T.214, K.215 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.16, B:M.17, B:K.215 BU3.10: 6 residues within 4Å: Chain B: A.107, K.108, T.111, R.218, E.219, P.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.111, B:R.218 BU3.11: 6 residues within 4Å: Chain A: K.403, K.404, T.405 Chain B: E.418, A.419, T.420 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.418, B:T.420, A:T.405 Hydrophobic interactions: A:K.403

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 9 residues within 4Å: Chain A: R.11, M.17, N.19, N.23, S.54, N.97, K.215, M.216 Ligands: BU3.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.19, A:N.97, A:K.215 Salt bridges: A:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwanke, H. et al., The Cytomegalovirus M35 Protein Directly Binds to the Interferon-beta Enhancer and Modulates Transcription of Ifnb1 and Other IRF3-Driven Genes. J.Virol. (2023)

Release Date

2023-10-11

Peptides

Protein M35: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein M35