SMTL ID : 8bv9.1

Acylphosphatase from E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.14, Q.15, G.16, V.17, G.18, F.19, R.20, Y.21 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.14, A:G.16, A:V.17, A:G.18, A:F.19, A:R.20, A:R.20, A:Y.21

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: H.80, H.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.80, A:H.81 EDO.3: 2 residues within 4Å: Chain A: W.9, Y.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.11, A:Y.11

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: E.52, E.56, H.81, P.82, S.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.56, A:E.56, A:S.83, A:S.83, A:S.83 Salt bridges: A:H.81 SO4.5: 4 residues within 4Å: Chain A: E.51, E.52, G.53, Q.54 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.51, A:E.52, A:G.53, A:Q.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Rodriguez, S. et al., First 3-D structural evidence of a native-like intertwined dimer in the acylphosphatase family. Biochem.Biophys.Res.Commun. (2023)

Release Date

2023-10-18

Peptides

Acylphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acylphosphatase