SMTL ID : 8bzi.1

Human MST3 (STK24) kinase in complex with inhibitor MR39

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x SJL: 8-(4-azanylbutyl)-6-[2,5-bis(fluoranyl)-4-(6-methylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one(Non-covalent)

SJL.1: 18 residues within 4Å: Chain A: I.40, S.44, F.45, V.48, A.61, K.63, E.80, I.81, L.84, I.107, M.109, E.110, Y.111, L.112, A.158, N.159, L.161, D.172 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.45, A:A.61, A:K.63, A:K.63, A:E.80, A:E.80, A:I.81, A:L.84, A:I.107, A:L.161 Hydrogen bonds: A:L.112, A:L.112, A:A.158 Water bridges: A:N.159

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: D.53, T.56, K.58, V.60, Y.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.56, A:T.56 Water bridges: A:D.53 EDO.3: 4 residues within 4Å: Chain A: G.251, N.252, Y.253, K.258 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.258 EDO.4: 4 residues within 4Å: Chain A: F.194, W.195, P.227, S.230 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rak, M. et al., Shifting the selectivity of pyrido[2,3-d]pyrimidin-7(8H)-one inhibitors towards the salt-inducible kinase (SIK) subfamily. Eur.J.Med.Chem. (2023)

Release Date

2023-01-18

Peptides

Serine/threonine-protein kinase 24: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 24

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