SMTL ID : 8bzn.1

SARS-CoV-2 non-structural protein 10 (nsp10) variant T102I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.68, C.71, H.77, C.84 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.68, A:C.71, A:H.77, A:C.84 ZN.2: 4 residues within 4Å: Chain A: C.111, C.114, C.122, C.124 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.111, A:C.114, A:C.122, A:C.124

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Q.59, P.94, W.117, Y.120, G.121 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: M.2, G.3, S.5, T.6 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 10 residues within 4Å: Chain A: T.1, M.2, G.3, N.4, V.7, Y.24, Q.30, P.31, I.32, T.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.2, A:G.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Emerging variants of SARS-CoV-2 NSP10 highlight strong functional conservation of its binding to two non-structural proteins, NSP14 and NSP16. Elife (2023)

Release Date

2023-12-27

Peptides

Replicase polyprotein 1ab: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replicase polyprotein 1ab