SMTL ID : 8bzr.1

UFC1-UFM1 conjugate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Y.41, L.44, I.45, V.48, F.59, R.60, L.61, E.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.61, A:L.61 EDO.2: 8 residues within 4Å: Chain A: T.97, T.98, A.99, F.126, K.127, W.130, A.131 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.97, A:A.99, A:A.99 EDO.3: 4 residues within 4Å: Chain A: P.27, W.33, E.66, T.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.27, A:W.33 EDO.4: 8 residues within 4Å: Chain A: K.82, Y.83, E.84, F.85, E.106, I.164, Q.165, H.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.84, A:E.84 EDO.5: 5 residues within 4Å: Chain A: T.98, A.99, E.101, K.127 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.99, A:K.127 EDO.6: 8 residues within 4Å: Chain B: A.49, I.50, I.51, G.57, I.58, N.59, P.60 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.50, B:I.58, B:I.58 EDO.7: 7 residues within 4Å: Chain B: F.30, L.34, A.49, I.50, I.58, P.60 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.50, B:I.50 EDO.8: 2 residues within 4Å: Chain B: N.53, D.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makhlouf, L. et al., The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons. Nature (2024)

Release Date

2023-12-27

Peptides

Ubiquitin-fold modifier-conjugating enzyme 1: A
Ubiquitin-fold modifier 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-fold modifier-conjugating enzyme 1

Ubiquitin-fold modifier 1