SMTL ID : 8bzy.1

Structure of SLC40/ferroportin in complex with vamifeport and synthetic nanobody Sy3 in occluded conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.1: 14 residues within 4Å: Chain A: Y.21, K.26, F.27, Y.30, L.31, S.34, L.35, W.38, N.173, T.177, I.181, L.184, T.185, W.212 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.35, A:W.38, A:T.177, A:I.181, A:L.184, A:W.212 Hydrogen bonds: A:Y.21, A:Y.30, A:N.173, A:T.177, A:T.177 Salt bridges: A:K.26, A:R.180

1 x SZU: 2-[2-[2-(1~{H}-benzimidazol-2-yl)ethylamino]ethyl]-~{N}-[(3-fluoranylpyridin-2-yl)methyl]-1,3-oxazole-4-carboxamide(Non-covalent)

SZU.2: 17 residues within 4Å: Chain A: Y.65, G.66, V.69, L.315, L.318, Y.319, T.321, L.323, G.324, T.330, R.467, L.470, W.471, D.474, D.505, H.508, F.509 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.65, A:V.69, A:D.474, A:F.509 Hydrogen bonds: A:T.330, A:T.330, A:R.467 pi-Stacking: A:Y.319, A:W.471, A:F.509

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lehmann, E.F. et al., Structures of ferroportin in complex with its specific inhibitor vamifeport. Elife (2023)

Release Date

2023-03-22

Peptides

Solute carrier family 40 member 1: A
Sybody 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 40 member 1

Sybody 3

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