SMTL ID : 8c06.1

Structure of Dimeric HECT E3 Ubiquitin Ligase UBR5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.1186, C.1215, C.1218, C.1239 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1186, A:C.1215, A:C.1218, A:C.1239 ZN.2: 5 residues within 4Å: Chain A: C.1218, C.1222, C.1241, C.1247 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1218, A:C.1222, A:C.1241, A:C.1247 ZN.3: 4 residues within 4Å: Chain A: C.1203, C.1206, H.1223, H.1226 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1203, A:C.1206, A:H.1223, A:H.1226 ZN.4: 5 residues within 4Å: Chain C: C.1186, C.1215, C.1218, C.1239 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1186, C:C.1215, C:C.1218, C:C.1239 ZN.5: 5 residues within 4Å: Chain C: C.1218, C.1222, C.1241, C.1247 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1218, C:C.1222, C:C.1241, C:C.1247 ZN.6: 4 residues within 4Å: Chain C: C.1203, C.1206, H.1223, H.1226 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1203, C:C.1206, C:H.1223, C:H.1226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hehl, L.A. et al., Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5. Nat.Chem.Biol. (2024)

Release Date

2023-08-23

Peptides

E3 ubiquitin-protein ligase UBR5: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
F

F
G

E3 ubiquitin-protein ligase UBR5

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