SMTL ID : 8c2z.1

Crystal structure of DYRK1B in complex with AZ191

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x QS0: N-[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]-4-(1-methylpyrrolo[2,3-c]pyridin-3-yl)pyrimidin-2-amine

QS0.1: 18 residues within 4Å: Chain A: I.41, V.49, A.62, K.64, F.114, E.115, L.116, L.117, S.118, Y.119, N.120, D.123, R.126, E.167, N.168, L.170, V.182, D.183 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.41, A:V.49, A:A.62, A:F.114, A:V.182, A:V.182 Hydrogen bonds: A:L.117, A:L.117, A:D.183 Salt bridges: A:D.123

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 2 residues within 4Å: Chain A: D.163, D.183 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.163, A:D.183, H2O.1, H2O.3, H2O.3, H2O.4 MN.3: 2 residues within 4Å: Chain A: E.84, H.103 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.84, A:E.84, A:H.103, H2O.5, H2O.5 MN.4: 1 residues within 4Å: Chain A: T.232 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.232, H2O.3, H2O.3, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grygier, P. et al., Structural perspective on the design of selective DYRK1B inhibitors. To Be Published

Release Date

2024-01-17

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1B