SMTL ID : 8c44.1

HB3VAR03 apo headstructure (PfEMP1 A) complexed with EPCR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.1: 23 residues within 4Å: Chain B: L.6, Q.7, N.22, H.31, L.33, T.57, L.61, Y.64, Q.67, F.68, L.71, L.81, L.91, F.115, T.139, L.143, R.148, E.152, L.153, E.155, F.156, T.160, Y.164 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:Q.7, B:H.31, B:L.33, B:T.57, B:L.61, B:L.61, B:Y.64, B:Y.64, B:Y.64, B:Y.64, B:F.68, B:L.71, B:L.81, B:L.91, B:F.115, B:T.139, B:L.143, B:F.156, B:F.156, B:T.160, B:Y.164 Hydrogen bonds: B:Q.67, B:E.155 Salt bridges: B:R.148

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain B: N.39 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajan Raghavan, S.S. et al., Endothelial protein C receptor binding induces conformational changes to severe malaria-associated group A PfEMP1. Structure (2023)

Release Date

2023-08-16

Peptides

PfEMP1: A
Endothelial protein C receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

PfEMP1

Endothelial protein C receptor