SMTL ID : 8c4p.1 (1 other biounit)

CdaA-compound 7 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x TJ9: ~{N}-[5-(2-azanyl-1,3-thiazol-4-yl)-4-methyl-1,3-thiazol-2-yl]ethanamide(Non-covalent)

TJ9.1: 12 residues within 4Å: Chain A: L.36, D.76, G.77, A.78, S.91, Y.92, L.93, L.95, T.107, R.108, A.111 Ligands: CL.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.36, A:A.111 Hydrogen bonds: A:L.93, A:L.93 pi-Stacking: A:Y.92

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.108, H.109, S.127, E.128 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: S.167 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: S.8, R.9 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.32 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: G.4, S.5, Y.6, G.7, R.9 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: S.61, I.65 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: Q.62 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: P.94, L.95 Ligands: TJ9.1 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: S.146, E.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neumann, P. et al., Computer-aided design of a cyclic di-AMP synthesizing enzyme CdaA inhibitor. Microlife (2023)

Release Date

2023-06-07

Peptides

Diadenylate cyclase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diadenylate cyclase

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