- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 21 residues within 4Å:- Chain A: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, V.181, R.199, H.200, G.201, Y.202, L.203, P.204, R.219
- Chain B: K.157, R.199
- Ligands: ATP.5
19 PLIP interactions:14 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.136, A:T.156, A:T.156, A:T.180, A:T.180, A:G.201
- Water bridges: A:K.157, A:K.157, B:K.157, B:K.157
- Salt bridges: A:K.157, A:K.157, A:R.219, A:R.219, B:K.157, B:K.157, B:K.157
- pi-Stacking: A:H.200, A:H.200
ATP.5: 19 residues within 4Å:- Chain A: K.157, R.199
- Chain B: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, H.200, G.201, Y.202, L.203, P.204, R.219
- Ligands: ATP.2
17 PLIP interactions:13 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.136, B:T.180, B:T.180, B:G.201, B:Y.202
- Water bridges: B:K.157, B:K.157, B:R.219, A:K.157
- Salt bridges: B:K.157, B:K.157, B:R.219, A:K.157, A:K.157, A:K.157
- pi-Stacking: B:H.200, B:H.200
ATP.8: 21 residues within 4Å:- Chain C: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, V.181, R.199, H.200, G.201, Y.202, L.203, P.204, R.219
- Chain D: K.157, R.199
- Ligands: ATP.11
19 PLIP interactions:14 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:S.136, C:T.156, C:T.156, C:T.180, C:T.180, C:G.201
- Water bridges: C:K.157, C:K.157, D:K.157, D:K.157
- Salt bridges: C:K.157, C:K.157, C:R.219, C:R.219, D:K.157, D:K.157, D:K.157
- pi-Stacking: C:H.200, C:H.200
ATP.11: 19 residues within 4Å:- Chain C: K.157, R.199
- Chain D: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, H.200, G.201, Y.202, L.203, P.204, R.219
- Ligands: ATP.8
17 PLIP interactions:13 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:S.136, D:T.180, D:T.180, D:G.201, D:Y.202
- Water bridges: D:K.157, D:K.157, D:R.219, C:K.157
- Salt bridges: D:K.157, D:K.157, D:R.219, C:K.157, C:K.157, C:K.157
- pi-Stacking: D:H.200, D:H.200
ATP.14: 21 residues within 4Å:- Chain E: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, V.181, R.199, H.200, G.201, Y.202, L.203, P.204, R.219
- Chain F: K.157, R.199
- Ligands: ATP.17
19 PLIP interactions:14 interactions with chain E, 5 interactions with chain F- Hydrogen bonds: E:S.136, E:T.156, E:T.156, E:T.180, E:T.180, E:G.201
- Water bridges: E:K.157, E:K.157, F:K.157, F:K.157
- Salt bridges: E:K.157, E:K.157, E:R.219, E:R.219, F:K.157, F:K.157, F:K.157
- pi-Stacking: E:H.200, E:H.200
ATP.17: 19 residues within 4Å:- Chain E: K.157, R.199
- Chain F: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, H.200, G.201, Y.202, L.203, P.204, R.219
- Ligands: ATP.14
17 PLIP interactions:13 interactions with chain F, 4 interactions with chain E- Hydrogen bonds: F:S.136, F:T.180, F:T.180, F:G.201, F:Y.202
- Water bridges: F:K.157, F:K.157, F:R.219, E:K.157
- Salt bridges: F:K.157, F:K.157, F:R.219, E:K.157, E:K.157, E:K.157
- pi-Stacking: F:H.200, F:H.200
ATP.20: 21 residues within 4Å:- Chain G: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, V.181, R.199, H.200, G.201, Y.202, L.203, P.204, R.219
- Chain H: K.157, R.199
- Ligands: ATP.23
19 PLIP interactions:14 interactions with chain G, 5 interactions with chain H- Hydrogen bonds: G:S.136, G:T.156, G:T.156, G:T.180, G:T.180, G:G.201
- Water bridges: G:K.157, G:K.157, H:K.157, H:K.157
- Salt bridges: G:K.157, G:K.157, G:R.219, G:R.219, H:K.157, H:K.157, H:K.157
- pi-Stacking: G:H.200, G:H.200
ATP.23: 19 residues within 4Å:- Chain G: K.157, R.199
- Chain H: S.136, I.153, C.155, T.156, K.157, D.158, T.174, N.178, M.179, T.180, H.200, G.201, Y.202, L.203, P.204, R.219
- Ligands: ATP.20
17 PLIP interactions:4 interactions with chain G, 13 interactions with chain H- Water bridges: G:K.157, H:K.157, H:K.157, H:R.219
- Salt bridges: G:K.157, G:K.157, G:K.157, H:K.157, H:K.157, H:R.219
- Hydrogen bonds: H:S.136, H:T.180, H:T.180, H:G.201, H:Y.202
- pi-Stacking: H:H.200, H:H.200
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 6 residues within 4Å:- Chain A: G.359, G.360, L.361, R.362, G.381, S.382
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.360, A:L.361, A:G.381, A:S.382
- Water bridges: A:M.383
PO4.6: 7 residues within 4Å:- Chain B: M.66, G.359, G.360, L.361, G.381, S.382, M.383
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.360, B:L.361, B:G.381, B:S.382, B:M.383
PO4.9: 6 residues within 4Å:- Chain C: G.359, G.360, L.361, R.362, G.381, S.382
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.360, C:L.361, C:G.381, C:S.382
- Water bridges: C:M.383
PO4.12: 7 residues within 4Å:- Chain D: M.66, G.359, G.360, L.361, G.381, S.382, M.383
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.360, D:L.361, D:G.381, D:S.382, D:M.383
PO4.15: 6 residues within 4Å:- Chain E: G.359, G.360, L.361, R.362, G.381, S.382
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:G.360, E:L.361, E:G.381, E:S.382
- Water bridges: E:M.383
PO4.18: 7 residues within 4Å:- Chain F: M.66, G.359, G.360, L.361, G.381, S.382, M.383
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:G.360, F:L.361, F:G.381, F:S.382, F:M.383
PO4.21: 6 residues within 4Å:- Chain G: G.359, G.360, L.361, R.362, G.381, S.382
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:G.360, G:L.361, G:G.381, G:S.382
- Water bridges: G:M.383
PO4.24: 7 residues within 4Å:- Chain H: M.66, G.359, G.360, L.361, G.381, S.382, M.383
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:G.360, H:L.361, H:G.381, H:S.382, H:M.383
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schonherr, R. et al., A streamlined approach to structure elucidation using in cellulo crystallized recombinant proteins, InCellCryst. Nat Commun (2024)
- Release Date
- 2024-01-17
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schonherr, R. et al., A streamlined approach to structure elucidation using in cellulo crystallized recombinant proteins, InCellCryst. Nat Commun (2024)
- Release Date
- 2024-01-17
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B