SMTL ID : 8c54.1

Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 21 residues within 4Å: Chain A: I.159, T.160, P.161, W.162, K.186, P.187, A.188, A.219, K.220, G.223, F.237, T.238, G.239, S.240, V.243, W.246, E.261, L.262, G.263, C.295, F.394 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.161 Hydrogen bonds: A:T.160, A:T.160, A:K.186, A:S.240, A:E.261 Water bridges: A:K.186, A:S.189 NAI.2: 21 residues within 4Å: Chain B: I.159, T.160, P.161, W.162, K.186, P.187, A.188, A.219, K.220, G.223, F.237, T.238, G.239, S.240, V.243, W.246, E.261, L.262, G.263, C.295, F.394 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.161 Hydrogen bonds: B:T.160, B:T.160, B:K.186, B:S.240, B:E.261 Water bridges: B:K.186, B:S.189 NAI.3: 21 residues within 4Å: Chain C: I.159, T.160, P.161, W.162, K.186, P.187, A.188, A.219, K.220, G.223, F.237, T.238, G.239, S.240, V.243, W.246, E.261, L.262, G.263, C.295, F.394 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:P.161 Hydrogen bonds: C:T.160, C:T.160, C:K.186, C:S.240, C:E.261 Water bridges: C:K.186, C:S.189 NAI.4: 21 residues within 4Å: Chain D: I.159, T.160, P.161, W.162, K.186, P.187, A.188, A.219, K.220, G.223, F.237, T.238, G.239, S.240, V.243, W.246, E.261, L.262, G.263, C.295, F.394 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:P.161 Hydrogen bonds: D:T.160, D:T.160, D:K.186, D:S.240, D:E.261 Water bridges: D:K.186, D:S.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Molecular basis of sulfolactate synthesis by sulfolactaldehyde dehydrogenase from Rhizobium leguminosarum. Chem Sci (2023)

Release Date

2023-09-20

Peptides

Succinate semialdehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Succinate semialdehyde dehydrogenase