SMTL ID : 8c5d.1

Glutathione transferase P1-1 from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.27, S.28, W.29, K.30, E.31, E.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.29, A:E.198 Water bridges: A:S.28, A:E.31 GOL.12: 9 residues within 4Å: Chain A: R.71, D.95, E.98 Chain B: N.67, R.71, N.94, D.95, E.98 Ligands: NA.7 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.67, B:R.71, B:R.71, B:N.94, B:N.94, B:D.95, A:D.95 Water bridges: A:N.67, A:R.71, A:D.95

2 x GTB: S-(P-NITROBENZYL)GLUTATHIONE(Non-covalent)

GTB.2: 20 residues within 4Å: Chain A: Y.8, F.9, P.10, V.11, R.14, I.36, W.39, K.45, G.51, Q.52, L.53, P.54, Q.65, S.66, N.67, Y.109, G.206 Chain B: D.99 Ligands: NA.6, CA.9 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.9, A:V.11 Hydrogen bonds: A:W.39, A:Q.52, A:L.53, A:L.53, A:Q.65, A:Q.65, A:S.66, A:S.66 Water bridges: A:R.14, A:L.53, A:Q.65, A:N.67, B:D.99 Salt bridges: A:R.14, A:K.45 pi-Stacking: A:F.9 GTB.13: 22 residues within 4Å: Chain A: D.99 Chain B: Y.8, F.9, P.10, V.11, G.13, R.14, I.36, W.39, K.45, G.51, Q.52, L.53, P.54, Q.65, S.66, N.67, V.105, Y.109, G.206 Ligands: NA.17, CA.18 21 PLIP interactions: 20 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.9, B:V.11 Hydrogen bonds: B:W.39, B:Q.52, B:L.53, B:L.53, B:Q.65, B:S.66, B:S.66, A:D.99 Water bridges: B:R.14, B:R.14, B:K.45, B:K.45, B:L.53, B:Q.65, B:N.67, B:N.67 Salt bridges: B:R.14, B:K.45 pi-Stacking: B:F.9

11 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: G.13, R.14, R.101, Y.104, V.105 Ligands: CA.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.101 Water bridges: A:G.13 NA.4: 5 residues within 4Å: Chain A: G.96, D.99, L.100, F.130 Chain B: Y.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.100 Water bridges: A:D.99, A:H.126 NA.5: 2 residues within 4Å: Chain A: P.10, R.202 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.202, A:R.202 NA.6: 4 residues within 4Å: Chain A: R.14, E.98 Chain B: D.99 Ligands: GTB.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.98 Water bridges: A:N.67 NA.7: 5 residues within 4Å: Chain A: N.67, R.71, E.98 Chain B: D.95 Ligands: GOL.12 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.95, A:N.67, A:R.71 Water bridges: A:N.67 NA.8: 7 residues within 4Å: Chain A: G.13, R.14, C.15, E.16, A.17, R.101, D.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.16, A:A.17, A:D.158 Water bridges: A:M.18 NA.14: 4 residues within 4Å: Chain B: T.106, L.107, N.111, G.115 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.111 Water bridges: B:L.107, B:G.115 NA.15: 2 residues within 4Å: Chain B: K.121, A.122 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.121 Water bridges: B:A.122 NA.16: 4 residues within 4Å: Chain B: F.143, Q.148, I.149, R.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.149 Water bridges: B:I.149 NA.17: 2 residues within 4Å: Chain B: V.105 Ligands: GTB.13 No protein-ligand interaction detected (PLIP) NA.20: 3 residues within 4Å: Chain B: G.78, L.79, Q.148 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.78

4 x CA: CALCIUM ION(Non-covalent)

CA.9: 6 residues within 4Å: Chain A: Y.8, G.13, R.14, V.105 Ligands: GTB.2, NA.3 No protein-ligand interaction detected (PLIP) CA.10: 4 residues within 4Å: Chain A: T.106, L.107, N.111, G.115 No protein-ligand interaction detected (PLIP) CA.18: 5 residues within 4Å: Chain B: Y.8, G.13, R.14, V.105 Ligands: GTB.13 No protein-ligand interaction detected (PLIP) CA.19: 3 residues within 4Å: Chain B: T.47, L.49, Y.64 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 4 residues within 4Å: Chain A: F.143, R.183, L.184, R.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kupreienko, O. et al., Inhibition Analysis and High-Resolution Crystal Structure of Mus musculus Glutathione Transferase P1-1. Biomolecules (2023)

Release Date

2023-05-24

Peptides

Glutathione S-transferase P 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase P 1