SMTL ID : 8c6z.1

necrotic enteritis associated Clostridium p. chitinase F8UNI4 in complex with inhibitor bisdionin C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: D.232, N.236, G.288, E.290 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.232, A:G.288, A:E.290, H2O.1, H2O.1

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: D.34, C.73 Ligands: DW0.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.34, A:D.34, A:C.73, H2O.14 CD.3: 4 residues within 4Å: Chain A: D.63, F.64, D.125, E.177 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.63, A:F.64, A:D.125, A:E.177, H2O.12

2 x DW0: 1,1'-PROPANE-1,3-DIYLBIS(3,7-DIMETHYL-3,7-DIHYDRO-1H-PURINE-2,6-DIONE)(Non-covalent)

DW0.4: 15 residues within 4Å: Chain A: D.34, W.35, F.61, C.73, G.119, W.120, S.121, E.160, N.173, M.244, Y.246, D.247, Y.301, W.420 Ligands: CD.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.35 Hydrogen bonds: A:W.120, A:S.121 Water bridges: A:S.121, A:N.173, A:N.173, A:N.175 pi-Stacking: A:W.35, A:W.35, A:W.35, A:W.120, A:W.120, A:W.120, A:W.420, A:W.420, A:W.420 DW0.5: 7 residues within 4Å: Chain A: W.120, E.160, Y.161, R.166, D.172, D.247, W.252 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.252 Water bridges: A:E.160, A:R.166 pi-Stacking: A:W.120, A:W.120, A:W.252, A:W.252, A:W.252 pi-Cation interactions: A:K.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bloch, Y. et al., Contribution and structural characterization of Chitinases to Clostridium perfringens Pathogenesis in Broilers. To Be Published

Release Date

2023-05-31

Peptides

Chitinase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase B

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