- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 4 x B12: COBALAMIN(Non-covalent)
B12.2: 31 residues within 4Å:- Chain A: L.44, L.47, R.48, G.51, E.52, W.54, H.55, E.64, H.65, S.68, R.72, G.97, E.98, R.99, H.100, E.101, I.102, G.103, L.106, V.143, L.144, S.145, V.147, L.148, G.170, G.171, Q.172, M.187, D.189, L.190
- Ligands: 5AD.1
24 PLIP interactions:23 interactions with chain A, 1 interactions with chain B,- Hydrophobic interactions: A:V.143, A:V.147, A:M.187, A:L.190
- Hydrogen bonds: A:R.48, A:E.52, A:R.72, A:G.97, A:R.99, A:H.100, A:E.101, A:E.101, A:E.101, A:Q.172, A:Q.172
- Water bridges: A:R.48, A:I.102, A:I.102, A:E.150, A:E.150, A:E.150, B:R.72
- Salt bridges: A:R.48
- Metal complexes: A:H.100
B12.3: 31 residues within 4Å:- Chain B: L.44, L.47, R.48, G.51, E.52, W.54, H.55, E.64, H.65, S.68, R.72, G.97, E.98, R.99, H.100, E.101, I.102, G.103, L.106, V.143, L.144, S.145, V.147, L.148, G.170, G.171, Q.172, M.187, D.189, L.190
- Ligands: 5AD.4
29 PLIP interactions:28 interactions with chain B, 1 interactions with chain A,- Hydrophobic interactions: B:L.44, B:L.47, B:V.143, B:V.147, B:L.148, B:M.187, B:L.190
- Hydrogen bonds: B:E.52, B:R.72, B:G.97, B:R.99, B:H.100, B:E.101, B:E.101, B:I.102, B:Q.172, B:Q.172
- Water bridges: B:R.48, B:E.52, B:R.99, B:V.147, B:V.147, B:S.149, B:E.150, B:E.150, B:G.171, A:R.72
- Salt bridges: B:R.48
- Metal complexes: B:H.100
B12.5: 30 residues within 4Å:- Chain C: L.44, L.47, R.48, G.51, E.52, W.54, H.55, E.64, H.65, S.68, R.72, G.97, E.98, R.99, H.100, E.101, I.102, G.103, V.143, L.144, S.145, V.147, L.148, G.170, G.171, Q.172, M.187, D.189, L.190
- Ligands: 5AD.6
29 PLIP interactions:1 interactions with chain D, 28 interactions with chain C,- Water bridges: D:R.72, C:R.48, C:R.48, C:E.150, C:E.150, C:E.150, C:G.171, C:Q.172, C:Q.172, C:Q.172
- Hydrophobic interactions: C:L.47, C:V.143, C:V.147, C:V.147, C:L.148, C:L.148, C:M.187, C:L.190
- Hydrogen bonds: C:R.72, C:R.99, C:H.100, C:H.100, C:E.101, C:E.101, C:I.102, C:Q.172
- Salt bridges: C:R.48
- pi-Stacking: C:H.100
- Metal complexes: C:H.100
B12.7: 28 residues within 4Å:- Chain D: L.44, L.47, R.48, G.51, E.52, W.54, E.64, H.65, S.68, G.97, E.98, R.99, H.100, E.101, I.102, G.103, V.143, L.144, S.145, V.147, L.148, G.170, G.171, Q.172, M.187, D.189, L.190
- Ligands: 5AD.8
25 PLIP interactions:25 interactions with chain D,- Hydrophobic interactions: D:L.44, D:L.47, D:R.48, D:V.143, D:V.147, D:L.148, D:M.187, D:L.190
- Hydrogen bonds: D:R.48, D:E.52, D:R.72, D:G.97, D:R.99, D:H.100, D:E.101, D:I.102, D:Q.172, D:Q.172
- Water bridges: D:E.52, D:E.52, D:E.150, D:E.150, D:E.150
- Salt bridges: D:R.48
- Metal complexes: D:H.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poddar, H. et al., Redox driven B 12 -ligand switch drives CarH photoresponse. Nat Commun (2023)
- Release Date
- 2023-08-09
- Peptides
- Probable transcriptional regulator: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 4 x B12: COBALAMIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poddar, H. et al., Redox driven B 12 -ligand switch drives CarH photoresponse. Nat Commun (2023)
- Release Date
- 2023-08-09
- Peptides
- Probable transcriptional regulator: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D